XLOC_000114 (chtf18)


Basic Information

Item Value
gene id XLOC_000114
gene name chtf18
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 9199031 ~ 9227204 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00000211
CAATGATATTCACAAATTTTTGCGCGAAAGTGTCTGTTGCCGTCTTGTGTGCTCTCGGTCGTTATTGAGTTCATATGTCAAGTTAAAAGAAAATTTCCTGCCAGAGCAGACACTATACCGCAAACATGGACGAATATGACGAAATGTACGGGATTGAGGATGATTTTGAACGACAGTTCGCAGATGAGTTGGAAGTCATGGCTGAATTGGAGAGCAACAATCCACCAGCTGCAAAAGTGTCTGAATTTCGCAATAAGCCGATCACACAGACGTTCGAGGAAGCCCTTGTGTCCGGAGACCAGCCATCAAGGAAATCAGTAAATAACCAGAATCCAGAGAGCATCTCTCCGCCGGTATACGAGGAGGAAGAGGAGTCTCTGACCCCTAAACCCAAGAAAAGGAGGCAAGATGTGGCGAAAAAGCTCCAGTTTGGCGTTGACCAAGATGATGACATCACTCCTCCATCTTCCCCAGAGGTTTACGACAGGGAAGTGAGAGACGGgccTAGATTTTCCCTAACCCTGAGTCCAGACAGACCAGCAGCAACAAAAATAACGACAAATGTTTTAGATATTAGTGGACTGGGAGCTTTACAGGAGTCACCGAAGCAGGTGACGGCAGCAAAACGTCATGCTCAGAAACGCCCACCTGCAATCGGAGATTACATCACAGTCACAGACTCTATGGGAAACAGGGTCTACCTTAACAAGAAAGAGGATGTGGAGAAGACACCAGACCCGAGAGCCTTCCGTAACTCGCTGAATGGACTAGGACTGCTAGCTGTTCCCATTGAAGTGCTCAAGGAACAGATTGCAGAGAGACGGCATCGACAAGTGGTGGAGGAATCTCAAAGACTGACTGAACTTATGAAGAGTGGAATAGATTCAGATCTTCTCGCAGAAGAGCAGACAGACTCGGGTGTGGATGGGGATAGTGGGGAAGATGAAGCATCTTCACGACTTTGGGTGGATCAGTTCTCACCACAGCACTACACTGATCTGCTGAGTGATGATTTTACTAATCGCTGTCTGCTGAAATGGCTGAAGCTCTGGGACACTGTGGTCTTCGGGCGAGAGAGGAAAAGCCGTCCGGTCCCTGTAGAGGCCAGATCAAATTTTACAAACGCTCAAAATCAAAACCAGGCCCAACGTTTCAAAACCAAGTCTCAAATGACAGAAGAGATACTAGAGGCTGAGCTAGACCAGTACAAAAGACCGAAATTTAAGGTAGCGCTATTATCAGGTCCTCCTGGACTGGGGAAAACCACACTAGCACACATTATTGCAAAGCATGCTGGTTACAATGTAGTAGAAATCAATGCTAGTGATGACCGTAGTGCAGAGCTCTTTCAGAAGCGCATTGATACTGCCACACAGATGAAGTCTGTTCTGGGAGCCAATGAAAAGCCCAACTGCCTTATTATAGATGAAATCGACGGAGCTCCTGCTGCTGCCATTAATATCTTATTGGCCACCCTGAACCGGAAGGACAGCAAGGATGGAGAGGAAACAGGAGTCAATgccttgaaaaagaaaaagaaaaagcaatcTGTGCTGCTTAGACCAATCATCTGCATCTGCAATGATCTATATGTTCCAGCTCTAAGGCCACTGAGACAGCAAGCTTTCCTGCTGGTCTTTCCTCAGACTCTGCCATCACGCTTGGCTCAAAGATTAGCAGAgATCAGCAGGCGTCAGGGAATGAAAGCAGATACAGGCACTCTGATGGCCCTGTGTGAGAAAACTGACAATGACATCCGTTCTTGCATCAACACATTACAGTTTTTACACAGTCGTGGACAGAAGCACTTGGACCAGCGCAGTGTCAGCTCCATGTGTGTGGGATTGAAAGACCAAAACAAGGGACTGTTCTCAGTTTGGCAGGAGATCTTTCAGCTTCCTCGACTGAAAAGGAAGCGGATTGGTGGAGATCCTTTCAGTGGTTATGATGAGTTGGGACCTAAAGAGGGTGCACAAAGGCTTCAGCACATCTTACATTTGGTCTCATCTACTGGAGAACATGAGAAACTCACTCAGGGCCTCTATGACAACTTCCTAAGCATGAAGCTGAAGGATCCTGGGATGTTGGGTGTTTGCTCTGGTCTTGACTGGCTGTGTTTCTCAGACTtgctgaatgagtgtgtgttgcaTGGACAGAACTATTCGCTTATGCGCTACTTCCCCTTCCTGCCCGCTGCCTTTCACCAGCTGTACGCCGCCACCTCTGTCCCGCGCATCAATTATCCACACAGCCACTATGAGGCCTTTACCAAAACTCAGCACATCAGGAACGCCCTGCTCGCCATGTTGAACGACATCCCACCTGCCATACAGAGCCGTGTTTGCATGAGCTCTCTCTGTCTGGACATCCTCAGCCTTCTGCTGGAGCTCATCTCCCCCAAACTGAGACCGGTGAACCCTCAGCTTTACAGCACCAGGGAGAAGCAGCAGCTCTATGATCTGATCGACACAATGATCAACTACAACCTGACCTACAGACAGGACCGAACGCCAGAGGGACAGTACACTTATGTGCTGGAGCCTAATATTGAAGATGTGGTGAATTATCCTGGTTTACCTCCTCGGAGACAGTTAACCTATCAGGTGAAGCAGCTCATCGCCAGGGAGACGGAACTGGAGAGGATGAGGAGAGTAGAGAGAGCACAGCAGAGTCGAAACCCACAGAAAATGGAGACCGTAAATAAGAAtcaagaagaaaagaaaacagaagtgaagaAACAGACAAGCAGGAACCATCAACAGAGGCTGGAGAACATCGTAAAACAGACTGTGGTGGAGACCAGGCCCGAATTGGACTTTTTTGGACGAGCCATTGTACCCAAGGAGAAGCCTGTGGTCACTGCTACAAGTGAAGATGGCAAAGTGAGTGGCGTGCTGAACATTGGTAAAGCTGTGGGAAACAGCGACGTCTGGTTTCGTTTTAATGAAGGTGTGTCCAATGCAGTGCGCAGAAACGTTTACATTCGAGAGTTGCTGTAAACTGATCTGGAGAAAGGATGAAGTACATGTCAAATCaatctgtaaaaatctaaaatgttcGGAATAGTTAAACAAAACAGTCATCTAAattgtttgaaaaagaaaaaaaaaacactggttcctcattttctttttattgtgcTGTTGTATAGTTGTCTTACACTTTTATAAATACATGTTTTCACATTTGCTTTCTTTCTTATTATCATGAGAGTAAACAACAAAGCAGATTCACTGACAA
>TCONS_00000212
CGCAAACATGGACGAATATGACGAAATGTACGGGATTGAGGATGATTTTGAACGACAGTTCGCAGATGAGTTGGAAGTCATGGCTGAATTGGAGAGCAACAATCCACCAGCTGCAAAAGTGTCTGAATTTCGCAATAAGCCGATCACACAGACGTTCGAGGAAGCCCTTGTGTCCGGAGACCAGCCATCAAGGAAATCAGTAAATAACCAGAATCCAGAGAGCATCTCTCCGCCGGTATACGAGGAGGAAGAGGAGTCTCTGACCCCTAAACCCAAGAAAAGGAGGCAAGATGTGGCGAAAAAGCTCCAGTTTGGCGTTGACCAAGATGATGACATCACTCCTCCATCTTCCCCAGAGGTTTACGACAGGGAAGTGAGAGACGGgccTAGATTTTCCCTAACCCTGAGTCCAGACAGACCAGCAGCAACAAAAATAACGACAAATGTTTTAGATATTAGTGGACTGGGAGCTTTACAGGAGTCACCGAAGCAGGTGACGGCAGCAAAACGTCATGCTCAGAAACGCCCACCTGCAATCGGAGATTACATCACAGTCACAGACTCTATGGGAAACAGGGTCTACCTTAACAAGAAAGAGGATGTGGAGAAGACACCAGACCCGAGAGCCTTCCGTAACTCGCTGAATGGACTAGGACTGCTAGCTGTTCCCATTGAAGTGCTCAAGGAACAGATTGCAGAGAGACGGCATCGACAAGTGGTGGAGGAATCTCAAAGACTGACTGAACTTATGAAGAGTGGAATAGATTCAGATCTTCTCGCAGAAGAGCAGACAGACTCGGGTGTGGATGGGGATAGTGGGGAAGATGAAGCATCTTCACGACTTTGGGTGGATCAGTTCTCACCACAGCACTACACTGATCTGCTGAGTGATGATTTTACTAATCGCTGTCTGCTGAAATGGCTGAAGCTCTGGGACACTGTGGTCTTCGGGCGAGAGAGGAAAAGCCGTCCGGTCCCTGTAGAGGCCAGATCAAATTTTACAAACGCTCAAAATCAAAACCAGGCCCAACGTTTCAAAACCAAGTCTCAA

Function

symbol description
chtf18 Predicted to enable DNA binding activity. Predicted to contribute to DNA clamp loader activity and single-stranded DNA helicase activity. Predicted to be active in nucleus. Is expressed in alar plate midbrain region; eye; immature eye; optic tectum; and pharyngeal arch. Orthologous to human CHTF18 (chromosome transmission fidelity factor 18).

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0005524 ATP binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0017116 single-stranded DNA helicase activity molecular_function
GO:0003689 DNA clamp loader activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050522-508 Predicted to enable DNA binding activity. Predicted to contribute to DNA clamp loader activity and single-stranded DNA helicase activity. Predicted to be active in nucleus. Is expressed in alar plate midbrain region; eye; immature eye; optic tectum; and pharyngeal arch. Orthologous to human CHTF18 (chromosome transmission fidelity factor 18).

Ensembl:

ensembl_id ENSDARG00000058480

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00000211 False 3240 mRNA 0.47 22 9199031 9227204
TCONS_00000212 True 1051 mRNA 0.49 8 9199149 9206616

Neighbor

gene id symbol gene type direction distance location
XLOC_000113 plk1 coding upstream 37188 9153141 ~ 9161843 (+)
XLOC_000112 rasd3 coding upstream 53135 9144958 ~ 9145896 (+)
XLOC_000111 NA coding upstream 66541 9129386 ~ 9132490 (+)
XLOC_000110 cacng3a coding upstream 107096 9082417 ~ 9091935 (+)
XLOC_000109 BX004779.3 coding upstream 124552 9071324 ~ 9074479 (+)
XLOC_000116 BX323038.1 coding downstream 50642 9277846 ~ 9285351 (+)
XLOC_000117 uncx4.1 coding downstream 62899 9290103 ~ 9294115 (+)
XLOC_000118 elfn1b coding downstream 330008 9557212 ~ 9712302 (+)
XLOC_000119 pmm2 coding downstream 633177 9860381 ~ 9866856 (+)
XLOC_000120 NA coding downstream 659751 9886955 ~ 9914630 (+)
XLOC_000106 NA non-coding upstream 222609 8967479 ~ 8976422 (+)
XLOC_000105 NA non-coding upstream 233092 8950874 ~ 8965939 (+)
XLOC_000100 NA non-coding upstream 608395 8587230 ~ 8590636 (+)
XLOC_000098 AL928650.2 non-coding upstream 621757 8575307 ~ 8577274 (+)
XLOC_000121 NA non-coding downstream 719460 9946664 ~ 9951873 (+)
XLOC_000133 AL935188.1 non-coding downstream 1136516 10363720 ~ 10363851 (+)
XLOC_000135 NA non-coding downstream 1234840 10462044 ~ 10462882 (+)

Expression


Co-expression Network