XLOC_001153


Basic Information

Item Value
gene id XLOC_001153
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 18810891 ~ 18811517 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00001840
GTGTCTCTTATCCCTCATCTGTTGCGCTTCAGGCTTAAAGAAGCTAAAGCAAAACAATGTCTGACAAACCTGATGTCAGTGAGGTTTCTCATTTCGACAAGAACAAGCTGAAGAAGACCGTAACTCATGAGAAAAACACTCTTCCCACCAAAGAGACTAATTTTTGTTTCCTCCCAAATGCCATCTGTCTAGCCATTGAGCAGGAGAAGAAATGTGAGACTTAAATTAGCCATGTTGGATCTTCACCAAGGACTGAATTGCAGatcatgtgactttttaaaaagatGGCTCTTCCTACCACCAGTTACTATGGCCATGCAGGCTGAAGTTGGAAATTGACCCATGTGTTATCAGATGATATCGAcgattctgataaaaaaaaaatgctgtaaaatcatGGATATTTAACTTTGTATAACTGTCTGATCTGCTCTCATTTTGACCTTTGGTGAAATAAACCTTTGAAATGAA
>TCONS_00001836
AGTGTCTCTTATCCCTCATCTGTTGCGCTTCAGGCTTAAAAGCTAAAGCAAAACAATGTCTGACAAACCTGATGTCAGTGAGGTTTCTCATTTCGACAAGAACAAGCTGAAGAAGACCGTAACTCATGAGAAAAACACTCTTCCCACCAAAGAGACCATTGAGCAGGAGAAGAAATGTGAGACTTAAATTAGCCATGTTGGATCTTCACCAAGGACTGAATTGCAGatcatgtgactttttaaaaagatGGCTCTTCCTACCACCAGTTACTATGGCCATGCAGGCTGAAGTTGGAAATTGACCCATGTGTTATCAGATGATATCGAcgattctgataaaaaaaaaatgctgtaaaatcatGGATATTTAACTTTGTATAACTGTCTGATCTGCTCTCATTTTGACCTTTGGTGAAATAAACCTTTGAAATGAA
>TCONS_00001837
GTCAGTGTCTCTTATCCCTCATCTGTTGCGCTTCAGGCTTAAGTAACTAAAGCAAAACAATGTCTGACAAACCTGATGTCAGTGAGGTTTCTCATTTCGACAAGAACAAGCTGAAGAAGACCGTAACTCATGAGAAAAACACTCTTCCCACCAAAGAGACCATTGAGCAGGAGAAGAAATGTGAGACTTAAATTAGCCATGTTGGATCTTCACCAAGGACTGAATTGCAGatcatgtgactttttaaaaagatGGCTCTTCCTACCACCAGTTACTATGGCCATGCAGGCTGAAGTTGGAAATTGACCCATGTGTTATCAGATGATATCGAcgattctgataaaaaaaaaatgctgtaaaatcatGGATATTTAACTTTGTATAACTGTCTGATCTGCTCTCATTTTGACCTTTGGTGAAATAAACCTTTGAAATGAA
>TCONS_00001838
GCATATATAAGTGTAAAGTCAGAAGCTTGTGTCAGTGTCTCTTATCCCTCATCTGTTGCGCTTCAGGCTTAAAGAAGCTAAAGCAAAACAATGTCTGACAAACCTGATGTCAGTGAGGTTTCTCATTTCGACAAGAACAAGCTGAAGAAGACCGTAACTCATGAGAAAAACACTCTTCCCACCAAAGAGACCATTGAGCAGGAGAAGAAATGTGAGACTTAAATTAGCCATGTTGGATCTTCACCAAGGACTGAATTGCAGatcatgtgactttttaaaaagatGGCTCTTCCTACCACCAGTTACTATGGCCATGCAGGCTGAAGTTGGAAATTGACCCATGTGTTATCAGATGATATCGAcgattctgataaaaaaaaaatgctgtaaaatcatGGATATTTAACTTTGTATAACTGTCTGATCTGCTCTCATTTTGACCTTTGGTGAAATAAACCTTTGAAATGAA
>TCONS_00001839
AGTGTCTCTTATCCCTCATCTGTTGCGCTTCAGGCTTAAGTAAGTTGTGTACTAAGTTTGGTTATGTGTTGTCATTTTTAGTGagctgttttaatttattttattcacatcCTCCTAGAGAAGCTAAAGCAAAACAATGTCTGACAAACCTGATGTCAGTGAGGTTTCTCATTTCGACAAGAACAAGCTGAAGAAGACCGTAACTCATGAGAAAAACACTCTTCCCACCAAAGAGACCATTGAGCAGGAGAAGAAATGTGAGACTTAAATTAGCCATGTTGGATCTTCACCAAGGACTGAATTGCAGatcatgtgactttttaaaaagatGGCTCTTCCTACCACCAGTTACTATGGCCATGCAGGCTGAAGTTGGAAATTGACCCATGTGTTATCAGATGATATCGAcgattctgataaaaaaaaaatgctgtaaaatcatGGATATTTAACTTTGTATAACTGTCTGATCTGCTCTCATTTTGACCTTTGGTGAAATAAACCTTTGAAAT

Function

GO:

id name namespace
GO:0006892 post-Golgi vesicle-mediated transport biological_process
GO:0005794 Golgi apparatus cellular_component
GO:0012505 endomembrane system cellular_component
GO:0043227 membrane-bounded organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

ZFIN:

id description
ZDB-GENE-090313-198 Predicted to enable actin monomer binding activity. Predicted to be involved in regulation of cell migration and sequestering of actin monomers. Predicted to act upstream of or within actin filament organization. Predicted to be located in cytoskeleton. Predicted to be active in cytoplasm.

Ensembl:

ensembl_id ENSDARG00000093886

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00001840 False 471 lncRNA 0.39 3 18810891 18811483
TCONS_00001836 False 434 processed_transcript 0.38 3 18810891 18811484
TCONS_00001837 False 438 lncRNA 0.39 3 18810891 18811487
TCONS_00001838 False 469 mRNA 0.38 3 18810891 18811517
TCONS_00001839 True 512 lncRNA 0.37 2 18810894 18811484

Neighbor

gene id symbol gene type direction distance location
XLOC_001152 pgm2 coding downstream 6972 18779168 ~ 18803919 (-)
XLOC_001151 tbc1d1 coding downstream 38580 18642117 ~ 18772311 (-)
XLOC_001150 klf3 coding downstream 195828 18594146 ~ 18615063 (-)
XLOC_001149 fam114a1 coding downstream 218823 18575747 ~ 18592068 (-)
XLOC_001148 klhl5 coding downstream 364730 18363833 ~ 18446161 (-)
XLOC_001154 zgc:195282 coding upstream 29945 18841462 ~ 18849029 (-)
XLOC_001155 NA coding upstream 122405 18933922 ~ 18936968 (-)
XLOC_001156 NA coding upstream 130882 18942399 ~ 18946858 (-)
XLOC_001157 phox2ba coding upstream 262809 19074326 ~ 19079957 (-)
XLOC_001158 NA coding upstream 278902 19090419 ~ 19091229 (-)
XLOC_001144 NA non-coding downstream 572951 18112356 ~ 18237940 (-)
XLOC_001146 NA non-coding downstream 635216 18171439 ~ 18175675 (-)
XLOC_001145 NA non-coding downstream 676380 18134023 ~ 18134511 (-)
XLOC_001143 AL929210.2 non-coding downstream 747254 18061682 ~ 18063637 (-)
XLOC_001142 CR391953.1 non-coding downstream 806589 18002567 ~ 18004302 (-)
XLOC_001159 NA non-coding upstream 298602 19110119 ~ 19112940 (-)
XLOC_001161 NA non-coding upstream 440841 19252358 ~ 19274288 (-)

Expression


Co-expression Network