XLOC_001142 (CR391953.1)


Basic Information

Item Value
gene id XLOC_001142
gene name CR391953.1
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 18002567 ~ 18004302 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00001813
attttatcacacgtgttcacaagcacattcagcaatatgtgtataaatgtatgtggccgagcagtataacgaaatagtaataaTTTATTGTTGTGTCTTAGAATAATttacaaaaaggaatcggttttaggcggattcgactctttactgttctaaggagccgattcatagaaccgagccgactcgattcgaccttcaccaggcaagcaacggctcttctaatttgaaatccacctgtcgccttttcctccagtgaattcatcctcggtaagtgtttaaaagtcaaattctgttcgttaaaggattgttttgtgtatatttccgtgtagtgtgtgtgtaatttaaaataattaaccaagttacttcagttgtaggttcttatgtcacgttattcgacgccagaccgtgtttgtagtgtttgcgaggtattagataacGTTAAGTGAGTTTATCttaagtgagtttttgaccatagtaacgttacctgaaaaaaaaaacttttacttgGGGTTAACTACATTAATGAATTctgtatttcagcacaacactgagatgaaggcaaagtcaccatgaaaagttaaacgtttaacgttaagctacagcaattgatgttgaaaaactgatgctaccaatctctcctcacttgattattcaaggtaatgttgatgtcttcctcattttgattagattataaaatgtcaagttgttctcagatttgttgtgaggagtttcatgtacaacctctttttcttcttccagtagcgacgcagtggcacagtaggtagtgctgtcgcttcacagcaagaaggttgctggttcaagcctcgactgggtcagttggctgaatacaatggcataatgattctgcttgctcacaggagctcagattgtgatgaacctggaatgcgacaccagttactcttaagtcaagaaccaaataaagcacagatgtggagggatctacaactaaactaa
>TCONS_00001812
attttatcacacgtgttcacaagcacattcagcaatatgtgtataaatgtatgtggccgagcagtataacgaaatagtaataaTTTATTGTTGTGTCTTAGAATAATttacaaaaaggaatcggttttaggcggattcgactctttactgttctaaggagccgattcatagaaccgagccgactcgattcgaccttcaccaggcaagcaacggctcttctaatttgaaatccacctgtcgccttttcctccagtgaattcatcctcggtaagtgtttaaaagtcaaattctgttcgttaaaggattgttttgtgtatatttccgtgtagtgtgtgtgtaatttaaaataattaaccaagttacttcagttgtaggttcttatgtcacgttattcgacgccagaccgtgtttgtagtgtttgcgaggtattagataacGTTAAGTGAGTTTATCttaagtgagtttttgaccatagtaacgttacctgaaaaaaaaaacttttacttgGGGTTAACTACATTAATGAATTctgtatttcagcacaacactgagatgaaggcaaagtcaccatgaaaagttaaacgtttaacgttaagctacagcaattgatgttgaaaaactgatgctaccaatctctcctcacttgattattcaagtagcgacgcagtggcacagtaggtagtgctgtcgcttcacagcaagaaggttgctggttcaagcctcgactgggtcagttggctgaatacaatggcataatgattctgcttgctcacaggagctcagattgtgatgaacctggaatgcgacaccagttactcttaagtcaagaaccaaataaagcacagatgtggagggatctacaactaaactaa

Function

GO:

id name namespace
GO:0045995 regulation of embryonic development biological_process
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0016070 RNA metabolic process biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0018130 heterocycle biosynthetic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0065007 biological regulation biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:1903225 negative regulation of endodermal cell differentiation biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:1901362 organic cyclic compound biosynthetic process biological_process
GO:0010467 gene expression biological_process
GO:0010468 regulation of gene expression biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0050789 regulation of biological process biological_process
GO:0050794 regulation of cellular process biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:0060795 cell fate commitment involved in formation of primary germ layer biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0042664 negative regulation of endodermal cell fate specification biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0043169 cation binding molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000117687

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00001813 False 975 lncRNA 0.38 3 18002567 18004302
TCONS_00001812 True 872 lncRNA 0.39 4 18002567 18004302

Neighbor

gene id symbol gene type direction distance location
XLOC_001141 NA coding downstream 27295 17972879 ~ 17975272 (-)
XLOC_001140 NA coding downstream 116835 17879432 ~ 17885732 (-)
XLOC_001139 sorbs2a coding downstream 198953 17747656 ~ 17803614 (-)
XLOC_001138 pdlim3a coding downstream 266706 17721853 ~ 17735861 (-)
XLOC_001137 ufsp2 coding downstream 290891 17699471 ~ 17711676 (-)
XLOC_001143 AL929210.2 coding upstream 57380 18061682 ~ 18063637 (-)
XLOC_001144 NA coding upstream 108054 18112356 ~ 18237940 (-)
XLOC_001145 NA coding upstream 129721 18134023 ~ 18134511 (-)
XLOC_001146 NA coding upstream 167137 18171439 ~ 18175675 (-)
XLOC_001147 mtnr1aa coding upstream 247033 18251335 ~ 18336878 (-)
XLOC_001130 BX537280.1 non-coding downstream 536112 17465956 ~ 17466455 (-)
XLOC_001129 NA non-coding downstream 641289 17330266 ~ 17361278 (-)
XLOC_001128 BX928751.7 non-coding downstream 1061137 16941215 ~ 16941430 (-)
XLOC_001153 NA non-coding upstream 806589 18810891 ~ 18811517 (-)

Expression


Co-expression Network