XLOC_001129


Basic Information

Item Value
gene id XLOC_001129
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 17330266 ~ 17361278 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00003379
ATTCACAGCAAATCATAAGTTCCAAAATATTCACGAAGGTCGGAAAATAAAGCGTGCATAAGATATACTCACGAGACTTCAGTTGTGCGCATTTATGTCGCTGAAAATCGTTTTTACTCGACGGTCGTCAAGAAACCACGCGACATTCCAAGGACAACTAAGCTCAAAACCTATCATAAAATGGTGAAGGCTACTACACATGGACATCACTGAACTGCGTTCTTGgCCCTGGTGATTTTTCTGTACACTGAAAAAGGgaatGTATGAGCATTCTTCAGAGCATCATCTAAATGTGTACCACAATACAAAGGAATTCAAATCCGTTAGAGCGACATAACCGCGGCAGTACTTTGACTGACATGATGTGCCTCCAATGCGCCACTGCTCTGATACTCACTTTAGCTCTGTGTGATAGTAATAGGATTCCATGACCCCAGACTGCAGTCTGAGCATCTTTGTCTTCTATACAAGTGAATCAGCATGAGAAGTCGAGAGACACCAGACCATTGATCTCATTCAGAAGAGAGAAGGAGAGATGCAACCGTCACGACCTTCATTTGTTAGTCTGTGTTTAAATGTGGAAGAGCTGCTGTCAGAATAATGTGCTTGACCACCCAGCATGCCTTCCTCTCGCTCTTCCTTTAAATGTCTCTCTGGAGcacgtacacaaacacacacacgtgatGCATCATCAACGAGCGTGAGTGATCTATCTTAAAAGTAAATAAGCACAGCACTTCCGTCACCTTAGGCTGAGAGAAGACAGCGCAGAGGTCAGAAGTAACTGTCATAAATTTTGTCTCtcaaagtgtgtatgtgtgtgtgatttgataGTCCCACAGCTGCAGGGCAGTAATCCCATAGCCAGTCTCAGAGGAAAAGCTTTAAAATGCCACCCGGATAGTGTTCAATCAAACTCACTCACATACACCCACAATCCACCACTTGCCTGATGACTCAATGATACTTAAAGAAGATGCAATAGTAATTTACCAATAAAGAAGCCTTTAATCTGTACACAGCCATATTAAGTCTGTTTTTCAGTGATTTGAATTACTAGCATGGGCTTTGTGGATATTTAGCATATGCAGAATCAGGATTGCACACCAAAACATGATCCCTATCTTGAAATGAAGTCTGTCatgaaacaaaaatgtattttgtcttattttaggAGTATAAAggatttattttgcattattgctTAGCTGCTCTTGTCCATATGAAGTGTTCTTTCTCACTTAAAG
>TCONS_00002936
atcccttccaCTTCCACTTCCTTAGGACAATTTAAAAGTTTGCTCCTCGGACAGAATACCCTTGCTTTCTGTAGAATATTCACAGCAAATCATAAGTTCCAAAATATTCACGAAGGTCGGAAAATAAAGCGTGCATAAGATATACTCACGAGACTTCAGTTGTGCGCATTTATGTCGCTGAAAATCGTTTTTACTCGACGGTCGTCAAGAAACCACGCGACATTCCAAGGACAACTAAGCTCAAAACCTATCATAAAATGGTGAAGGCTACTACACATGGACATCACTGAACTGCGTTCTTGgCCCTGGTGATTTTTCTGTACACTGAAAAAGGtgtaggaatGTATGAGCATTCTTCAGAGCATCATCTAAATGTGTACCACAATACAAAGGAATTCAAATCCGTTAGAGCGACATAACCTCTGAGCATCTTTGTCTTCTATACAAGTGAATCAGCATGAGAAGTCGAGAGACACCAGACCATTGATCTCATTCAGAAGAGAGAAGGAGAGATGCAACCGTCACGACCTTCATTTGTTAGTCTGTGTTTAAATGTGGAAGAGCTGCTGTCAGAATAATGTGCTTGACCACCCAGCATGCCTTCCTCTCGCTCTTCCTTTAAATGTCTCTCTGGAGcacgtacacaaacacacacacgtgatGCATCATCAACGAGCGTGAGTGATCTATCTTAAAAGTAAATAAGCACAGCACTTCCGTCACCTTAGGCTGAGAGAAGACAGCGCAGAGGTCAGAAGTAACTGTCATAAATTTTGTCTCtcaaagtgtgtatgtgtgtgtgatttgataGTCCCACAGCTGCAGGGCAGTAATCCCATAGCCAGTCTCAGAGGAAAAGCTTTAAAATGCCACCCGGATAGTGTTCAATCAAACTCACTCACATACACCCACAATCCACCACTTGCCTGATGACTCAATGATACTTAAAGAAGATGCAATAGTAATTTACCAATAAAGAAGCCTTTAATCTGTACACAGCCATATTAAGTCTGTTTTTCAGTGATTTGAATTACTAGCATGGGCTTTGTGGATATTTAGCATATGCAGAATCAGGATTGCACACCAAAACATGATCCCTATCTTGAAATGAAGTCTGTCatgaaacaaaaatgtattttgtcttattttaggAGTATAAAggatttattttgcattattgctTAGCTGCTCTTGTCCATATGAAGTGTTCTTTCTCACTTAAAG
>TCONS_00001791
atcccttccaCTTCCACTTCCTTAGGACAATTTAAAAGTTTGCTCCTCGGACAGAATACCCTTGCTTTCTGTAGAATATTCACAGCAAATCATAAGTTCCAAAATATTCACGAAGGTCGGAAAATAAAGCGTGCATAAGATATACTCACGAGACTTCAGTTGTGCGCATTTATGTCGCTGAAAATCGTTTTTACTCGACGGTCGTCAAGAAACCACGCGACATTCCAAGGACAACTAAGCTCAAAACCTATCATAAAATGGTGAAGGCTACTACACATGGACATCACTGAACTGCGTTCTTGgCCCTGGTGATTTTTCTGTACACTGAAAAAGGtgtaggaatGTATGAGCATTCTTCAGAGCATCATCTAAATGTGTACCACAATACAAAGGAATTCAAATCCGTTAGAGCGACATAACCGCGGCAGTACTTTGACTGACATGATGTGCCTCCAATGCGCCACTGCTCTGATACTCACTTTAGCTCTGTGTGATAGTAATAGGATTCCATGACCCCAGACTGCAGTCTGAGCATCTTTGTCTTCTATACAAGTGAATCAGCATGAGAAGTCGAGAGACACCAGACCATTGATCTCATTCAGAAGAGAGAAGGAGAGATGCAACCGTCACGACCTTCATTTGTTAGTCTGTGTTTAAATGTGGAAGAGCTGCTGTCAGAATAATGTGCTTGACCACCCAGCATGCCTTCCTCTCGCTCTTCCTTTAAATGTCTCTCTGGAGcacgtacacaaacacacacacgtgatGCATCATCAACGAGCGTGAGTGATCTATCTTAAAAGTAAATAAGCACAGCACTTCCGTCACCTTAGGCTGAGAGAAGACAGCGCAGAGGTCAGAAGTAACTGTCATAAATTTTGTCTCtcaaagtgtgtatgtgtgtgtgatttgataGTCCCACAGCTGCAGGGCAGTAATCCCATAGCCAGTCTCAGAGGAAAAGCTTTAAAATGCCACCCGGATAGTGTTCAATCAAACTCACTCACATACACCCACAATCCACCACTTGCCTGATGACTCAATGATACTTAAAGAAGATGCAATAGTAATTTACCAATAAAGAAGCCTTTAATCTGTACACAGCCATATTAAGTCTGTTTTTCAGTGATTTGAATTACTAGCATGGGCTTTGTGGATATTTAGCATATGCAGAATCAGGATTGCACACCAAAACATGATCCCTATCTTGAAATGAAGTCTGTCatgaaacaaaaatgtattttgtcttattttaggAGTATAAAggatttattttgcattattgctTAGCTGCTCTTGTCCATATGAAGTGTTCTTTCTCACTTAAAG

Function

GO:

id name namespace
GO:0033036 macromolecule localization biological_process
GO:0008104 protein localization biological_process
GO:0044444 obsolete cytoplasmic part cellular_component
GO:0000145 exocyst cellular_component
GO:0005737 cytoplasm cellular_component

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00003379 False 1247 lncRNA 0.41 5 17330266 17361201
TCONS_00002936 False 1224 lncRNA 0.40 4 17330266 17361278
TCONS_00001791 True 1329 lncRNA 0.41 5 17330266 17361278

Neighbor

gene id symbol gene type direction distance location
XLOC_001128 BX928751.7 coding downstream 388836 16941215 ~ 16941430 (-)
XLOC_001127 BX928751.2 coding downstream 390885 16939166 ~ 16939381 (-)
XLOC_001126 BX928751.3 coding downstream 392633 16937417 ~ 16937633 (-)
XLOC_001125 BX928751.6 coding downstream 394655 16935395 ~ 16935611 (-)
XLOC_001124 BX928751.5 coding downstream 397465 16932586 ~ 16932801 (-)
XLOC_001130 BX537280.1 coding upstream 104678 17465956 ~ 17466455 (-)
XLOC_001131 acsl1a coding upstream 176173 17537451 ~ 17587552 (-)
XLOC_001132 si:dkey-256e7.5 coding upstream 256737 17618015 ~ 17650223 (-)
XLOC_001133 si:dkey-256e7.5 coding upstream 291110 17652388 ~ 17663108 (-)
XLOC_001134 si:dkey-256e7.5 coding upstream 306655 17667933 ~ 17675037 (-)
XLOC_001140 NA non-coding upstream 518154 17879432 ~ 17885732 (-)
XLOC_001141 NA non-coding upstream 611601 17972879 ~ 17975272 (-)
XLOC_001142 CR391953.1 non-coding upstream 641289 18002567 ~ 18004302 (-)
XLOC_001143 AL929210.2 non-coding upstream 700404 18061682 ~ 18063637 (-)

Expression


Co-expression Network