XLOC_001139 (sorbs2a)


Basic Information

Item Value
gene id XLOC_001139
gene name sorbs2a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 17747656 ~ 17803614 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00001810
ATAGCGGAGGATGTGCTCATAAAAGAGCATCCCTGTCACTCACTCTGTGGCCTGTGAAGAGGGTCCAGAGCACCCCCAACCTGTACACTGCTGCAGATGCCTGGCGTTCACGGAGTGTCTCCGAGGGATTGAGAAATGGAGATGCCGGCAGCTCATCCTTGACCTCAAAAGGCTTTCGCAGTGTTAAACCCAACCTGCAGGACAAGAAATCTCCCACACcaGGTCAAATGACAGTGAATGGAAGCTCTCAGTCTCAGAGGCCCTTCTCTCCACCTGCACAccctcctcctccaccaccacCAATCCTCAGCCCAGGCCTGGTACAGATCCAGCATGGGCATAGTTCTGAGGGTTCACAGACACTGAGGAGAGAGTCTGTTGTCTCTGGTCAGACAGTGGTCAGTAGCTCCGTGCCCATCGCTCGCTTCTCAGAGGAAGAGAAGAAGGTCTCTGTCATAAAAGCTCCCCATTACGAAGGCATTGGACCAGTGGATGAGTCTGGCATTCCCATCGCCATCCGTACGACTGTGGACAGGCCCAAGGACTGGTACAAGACCATGTTCAAACAGATCCACATGGTTCATAAGCCAGATGATGACTATGCAGACACATATAATGCAACATACGCAGTTATAAACAACGACAACTATCCTCCAGTTCATGCTCACCCACCTCCTCGAACGCACACGTACCGGCCGCTCTCTAGAAATACCTCAGACATTCCCGACAGTGCTGCCCAGCGAGAGCTCTCGCCATCACCCGTGCCCCCGCCGCCCCCTCCGATGCCTTCTCTCCTCCAGCTCCGCTCGCGGGACATGGACAGAGAAAAAGAGTTCTCCCATGACCCAAACGAATGGGGTCCTCCAGAACGTAAAGTGGACACGCGTAAATATCGGGCAGAACCACGGAGCATCTTTGAGTATGAGCCTGGAAAATCCTCCATCCTCGAACAAGAAAGGCCTACATTTGATTTAAACCCAGATGACATAGATTTAGAGAACGAGCCTTGGTTTAAATTCTTTTCCGAGTTGGAGTTTGGACGGCCGCCTCCTAAAAAGAGGTTGGATTATAATCCTGACTACTCCACACATACTGTGGCACAGTCATCTCTCTATATCTCGCCTTCTGAACGACCTGATGGGCCTTCAAGCTCTGCAAGTGACTACAGAAAAAGACGAAAGTCTGAGCCATCTGTCACTCAAGCCAACACAGGAAGTGAACAGAATGCCAGTCAAGTATTTTCTCGCACACTGGACTCCAGTAAAGCACAGACGCTGAAGAAGCCCACCATACGCTCTTCCCCCTCTTCACCATCAAGAGCCAAAGCTGGAGACTTTAGTGAGTCACTCTCCTCCTGTATGAGCTCCCCAGGTATGGAGCGCCCTTCCTCTCGTATCTCCACAGACTCCCTCACCATCTCCACACCAACTTGGCCTAGCTCCAAGCGCTCCATCTGCTTCAAGAACGGTTGGCAGACAGGCAGGCATGAAAATACAGAGAACTGGAGCAGCGCTGATGATGATTCTGCCATGACCCCTACGTCACCACGGCTCAAATCGCGCAGCTGTGATGATTTGCTGTCTGATGGACACGGTGCTACCACCAATAATAATGGGAGAGAGGCCAATCCTGTTTCTAACACTCGTTCGGAAAGTGCGGGTTCACTTATTGATGAAGAAGCTCAAAAACCTCAAGTAAAAAGTCTTACCTCATCTCCCAGGGGCCGCCGTCATCACCGGCGTAAGTTGCCACATGATGCTCCAGGTTTCCTTCAGCTCTACAAGAAGATGCACCACATTGATCGTGAACAGTTATTGCCCTCTGAGGTGATTCGGTCTGTACGTGCACGAATCCTCGAATTGGAAAGACTACAGCAGCAACAAAGGCATAGCATTCATGGGTGGGCACCTTTAGGTCATGAGGTGCCACGGCAAATGGTTCCAAACCGTATATCTGCATATGAACAGCTTATCCAAAAATCAAAGTCTATGCCAGATCTTGGCGATGAAAATGCCCCTTCGGGCACCACCACACCCGGCTCCTCAAGGGCCAGCAGCTGCCCCAAGCGACGCTTTTCTGTTGAATCTCTTTTGGAAGAGGAGGATCCTCCAGAAAATGCTAGAAGTCCTCCTGAGGGTCAGCCAAGGTTGGGAGCCGACAGCTTGGTGCCAATTCATGGGAAGAACCAAAGGCAACATCAAGACTATTCGGACAGTGAACAGGACGCATGTGCCTCTGAAATAAGCGACATCCACATTGAAGGATCGTCATTGTGTAGTGAGAGCGACCTGGATCACTGCTCGCTCACCTCATCAGAAAGCTTCTATGGTTCTGGGCAACATCACCATCATGGACACCATCACCACTATCACCGCCACCATCACCAGAGTGTAGGTCAAAGTCAAGGTTACCAACACCGCCACCTTATCAGCTCCTGCAAGGGCCGCTGTCCGGCATCCTATACACGTTTCACTACAATGCTAAAACATGAGCGGCAACAAGAAAGGGCTCGACAGGAGTCCCATCCTGCAATTAGTTCTCCGCTTGCCCAACAATCACCCAGTGAGTCAGGCCTTTCCAAACTGGCCTTCCTGGTCAGCCCTGTGCCTTTCCGTCGGAAACGAGGCTCCCCACCAACTCAGCGGCGGCACTGCAGAAGTGGGCGCCCAAAATCTAAAACTGCAATTTATGAGGCTTTAGATGCCGCTTTACAGGACATTTATGACCACATAAGGGCGGAAAAGGGACAAGAACCAGCAAGGATGCCAGATGATAGCATATTGCGCCGGTTGTTGGAAGAGCTGCTGCCTGATGTGCCCAAGCGTAGCTCCTCGTTGAGGGTTCAGAGAGGGTCCGGCTCCCCCTCCTCGTCCCATGTCCACCAGCCTTATCATGGAGCCCACCAATGTGCCTCCTACCAGCAGCAACACCACCTTGCAGACACCTCCAACAACAACCAGCATAGTACTAATGCTAATGTGCACTGCTACTCAGATCAGGGCTCTGATACAGGACGAATTACTCCACAAAGCAGAAGACTCACACCAGAAAGAGAGGTCTCTTCTAAGCAGATGACCTATCTTATATTGTCTTCTCTCCTCCATCAGAAACAGTCTGCCAGAGCAATTTATGATTTTAAAGCTCAGTCTGCCAAGGAAATTTCCTTTAAAAAGGGTGATGCTGTCAACATCATCAGACAGATTGACAGTAACTGGTATGAAGGTGAACACAGAGGGCGGATTGGGATTTTCCCCATCTCTTATGTCGAGAAGGTGGCGTCTCCAGAGCGGAGACAGCCTGTCAGGCCTCCTCCTCCAGCTCAGGTTCGAGAGATGGGAGAGGCCATCGCGCGATACAACTTCAATGCTGACACTAATGTGGAGCTTTCTCTCAGAAAGGGGGAACGGGTGATCCTCCTAAGGAAGGTGGATCAGAATTGGTATGAAGGAAAGATTCCTGGCTCAAATAAGCAGGGCATTTTCCCTGTGTCCTATGTCGATGTGATCAAGGGCTCACCTTCTAAGAGCCCCAGTCACCAAGGAGACACGCACACATATAGAGCACAGAAGaaAATGATGCAGGATTCTCAGCATGCAGGTGGTGACCCCTTCCAAGCTGTGTATAACTATGTGCCTCGTAATGAGGATGAGCTGGAGCTGAAGGAAGGGGATGTTGTTGATGTTGTCGAGAGATGTGACGATGGCTGGTTTGTTGGTACGTCTCGGAGAACCAGGTTATTTGGAACGTTCCCAGGAAACTATGTTAAGCCGCTTTAACAAAGAGGAAATAATGGCACAACTATGGCCACTCCAGTGCCTACTGTGTAGGGCCAACGAGGCGCCTCACCTTTGAGAAAGTGTGTCTTTGCGTGCGAGAGTGTTCACAGACACTACAGTTTTAGCTCTGCCATTTCTGCACAGACGAACCACGGAAGTTACTTCACTGAGCACTTTTTTTTTCGTGCCACCACGCAGTCTCCTCGCCGTTCTTTCACCTGCTTTTCTGACGATAGCACACAcagcaatgtttttccaatgttttgttattttccaGGAATTAGCACGATGAG
>TCONS_00001811
ATGACCCCTAACCCTCCATCTTACAGTTCGCTTGCAATGCTGTCAAACGCCACATTCTCTCCCTCACAGAGTCATGATGCCATTTCCACAGGCTCTTACTCCATTCAGTCTAGTGCCACCTCCTCATACTCATACTCCAAGACCACCCGAACCTCCACTAACACCTCTGGAGCCCCTCTCGAGGAGTCCCCCTCCTCCCAGCAAGCTAATGCTAACAGTTTTATCTCTCGGGTCCTTGGAAGCAAATTGTCTTCCTCTAAATTTGCAACTGACCAACTAAACGCAGCACCTGTGACAAATATGATTACAACTGACCCTAAGACTAAAACTAAGCCAAAAGGAGCATTCACACCCTCACCGCTAGACCCCGCTAGCACTTCTGATTCACACATAGCCTCTCTCTCCATCCAGTTAGCTCCTCGCAGCCCCGAGCCCCGAGCAGAGAGCCGGTCTGAACCCAGGACAAATGCGGTGGACATCACTGACTCTACACGACCCCCTGTCATACCACCAAGACCAGCAGGCAGTTTGGTGGGTCAAATGACAGTGAATGGAAGCTCTCAGTCTCAGAGGCCCTTCTCTCCACCTGCACAccctcctcctccaccaccacCAATCCTCAGCCCAGGCCTGGTACAGATCCAGCATGGGCATAGTTCTGAGGGTTCACAGACACTGAGGAGAGAGTCTGTTGTCTCTGGTCAGACAGTGGTCAGTAGCTCCGTGCCCATCGCTCGCTTCTCAGAGGAAGAGAAGAAGGTCTCTGTCATAAAAGCTCCCCATTACGAAGGCATTGGACCAGTGGATGAGTCTGGCATTCCCATCGCCATCCGTACGACTGTGGACAGGCCCAAGGACTGGTACAAGACCATGTTCAAACAGATCCACATGGTTCATAAGCCAGATGATGACTATGCAGACACATATAATGCAACATACGCAGTTATAAACAACGACAACTATCCTCCAGTTCATGCTCACCCACCTCCTCGAACGCACACGTACCGGCCGCTCTCTAGAAATACCTCAGACATTCCCGACAGTGCTGCCCAGCGAGAGCTCTCGCCATCACCCGTGCCCCCGCCGCCCCCTCCGATGCCTTCTCTCCTCCAGCTCCGCTCGCGGGACATGGACAGAGAAAAAGAGTTCTCCCATGACCCAAACGAATGGGGTCCTCCAGAACGTAAAGTGGACACGCGTAAATATCGGGCAGAACCACGGAGCATCTTTGAGTATGAGCCTGGAAAATCCTCCATCCTCGAACAAGAAAGGCCTCCTCCTAAAAAGAGGTTGGATTATAATCCTGACTACTCCACACATACTGTGGCACAGTCATCTCTCTATATCTCGCCTTCTGAACGACCTGATGGGCCTTCAAGCTCTGCAAGTGACTACAGAAAAAGACGAAAGTCTGAGCCATCTGTCACTCAAGCCAACACAGGAAGTGAACAGAATGCCAGTCAAGTATTTTCTCGCACACTGGACTCCAGTAAAGCACAGACGCTGAAGAAGCCCACCATACGCTCTTCCCCCTCTTCACCATCAAGAGCCAAAGCTGGAGACTTTAGTGAGTCACTCTCCTCCTGTATGAGCTCCCCAGGTATGGAGCGCCCTTCCTCTCGTATCTCCACAGACTCCCTCACCATCTCCACACCAACTTGGCCTAGCTCCAAGCGCTCCATCTGCTTCAAGAACGGTTGGCAGACAGGCAGGCATGAAAATACAGAGAACTGGAGCAGCGCTGATGATGATTCTGCCATGACCCCTACGTCACCACGGCTCAAATCGCGCAGCTGTGATGATTTGCTGTCTGATGGACACGGTGCTACCACCAATAATAATGGGAGAGAGGCCAATCCTGTTTCTAACACTCGTTCGGAAAGTGCGGGTTCACTTATTGATGAAGAAGCTCAAAAACCTCAAGTAAAAAGTCTTACCTCATCTCCCAGGGGCCGCCGTCATCACCGGCGTAAGTTGCCACATGATGCTCCAGGTTTCCTTCAGCTCTACAAGAAGATGCACCACATTGATCGTGAACAGTTATTGCCCTCTGAGGTGATTCGGTCTGTACGTGCACGAATCCTCGAATTGGAAAGACTACAGCAGCAACAAAGGCATAGCATTCATGGGTGGGCACCTTTAGGTCATGAGGTGCCACGGCAAATGGTTCCAAACCGTATATCTGCATATGAACAGCTTATCCAAAAATCAAAGTCTATGCCAGATCTTGGCGATGAAAATGCCCCTTCGGGCACCACCACACCCGGCTCCTCAAGGGCCAGCAGCTGCCCCAAGCGACGCTTTTCTGTTGAATCTCTTTTGGAAGAGGAGGATCCTCCAGAAAATGCTAGAAGTCCTCCTGAGGGTCAGCCAAGGTTGGGAGCCGACAGCTTGGTGCCAATTCATGGGAAGAACCAAAGGCAACATCAAGACTATTCGGACAGTGAACAGGACGCATGTGCCTCTGAAATAAGCGACATCCACATTGAAGGATCGTCATTGTGTAGTGAGAGCGACCTGGATCACTGCTCGCTCACCTCATCAGAAAGCTTCTATGGTTCTGGGCAACATCACCATCATGGACACCATCACCACTATCACCGCCACCATCACCAGAGTGTAGGTCAAAGTCAAGGTTACCAACACCGCCACCTTATCAGCTCCTGCAAGGGCCGCTGTCCGGCATCCTATACACGTTTCACTACAATGCTAAAACATGAGCGGCAACAAGAAAGGGCTCGACAGGAGTCCCATCCTGCAATTAGTTCTCCGCTTGCCCAACAATCACCCAGTGAGTCAGGCCTTTCCAAACTGGCCTTCCTGGTCAGCCCTGTGCCTTTCCGTCGGAAACGAGGCTCCCCACCAACTCAGCGGCGGCACTGCAGAAGTGGGCGCCCAAAATCTAAAACTGCAATTTATGAGGCTTTAGATGCCGCTTTACAGGACATTTATGACCACATAAGGGCGGAAAAGGGACAAGAACCAGCAAGGATGCCAGATGATAGCATATTGCGCCGGTTGTTGGAAGAGCTGCTGCCTGATGTGCCCAAGCGTAGCTCCTCGTTGAGGGTTCAGAGAGGGTCCGGCTCCCCCTCCTCGTCCCATGTCCACCAGCCTTATCATGGAGCCCACCAATGTGCCTCCTACCAGCAGCAACACCACCTTGCAGACACCTCCAACAACAACCAGCATAGTACTAATGCTAATGTGCACTGCTACTCAGATCAGGGCTCTGATACAGGACGAATTACTCCACAAAGCAGAAGACTCACACCAGAAAGAGAGGTCTCTTCTAAGCAGATGACCTATCTTATATTGTCTTCTCTCCTCCATCAGAAACAGTCTGCCAGAGCAATTTATGATTTTAAAGCTCAGTCTGCCAAGGAAATTTCCTTTAAAAAGGGTGATGCTGTCAACATCATCAGACAGATTGACAGTAACTGGTATGAAGGTGAACACAGAGGGCGGATTGGGATTTTCCCCATCTCTTATGTCGAGAAGGTGGCGTCTCCAGAGCGGAGACAGCCTGTCAGGCCTCCTCCTCCAGCTCAGGTTCGAGAGATGGGAGAGGCCATCGCGCGATACAACTTCAATGCTGACACTAATGTGGAGCTTTCTCTCAGAAAGGGGGAACGGGTGATCCTCCTAAGGAAGGTGGATCAGAATTGGTATGAAGGAAAGATTCCTGGCTCAAATAAGCAGGGCATTTTCCCTGTGTCCTATGTCGATGTGATCAAGGGCTCACCTTCTAAGAGCCCCAGTCACCAAGGAGACACGCACACATATAGAGCACAGAAGaaAATGATGCAGGATTCTCAGCATGCAGGTGGTGACCCCTTCCAAGCTGTGTATAACTATGTGCCTCGTAATGAGGATGAGCTGGAGCTGAAGGAAGGGGATGTTGTTGATGTTGTCGAGAGATGTGACGATGGCTGGTTTGTTGGTACGTCTCGGAGAACCAGGTTATTTGGAACGTTCCCAGGAAACTATGTTAAGCCGCTTTAA

Function

symbol description
sorbs2a Predicted to act upstream of or within actin filament organization. Predicted to be located in cytoplasm; focal adhesion; and membrane. Orthologous to human SORBS2 (sorbin and SH3 domain containing 2).

GO:

id name namespace
GO:0007015 actin filament organization biological_process

KEGG: NA

ZFIN:

id description
ZDB-GENE-070308-2 Predicted to act upstream of or within actin filament organization. Predicted to be located in cytoplasm; focal adhesion; and membrane. Orthologous to human SORBS2 (sorbin and SH3 domain containing 2).

Ensembl:

ensembl_id ENSDARG00000003046

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00001810 False 4069 mRNA 0.51 21 17747656 17803614
TCONS_00001811 True 4005 mRNA 0.51 19 17747949 17797802

Neighbor

gene id symbol gene type direction distance location
XLOC_001138 pdlim3a coding downstream 11795 17721853 ~ 17735861 (-)
XLOC_001135 si:dkey-256e7.8 coding downstream 32163 17677373 ~ 17715493 (-)
XLOC_001137 ufsp2 coding downstream 35980 17699471 ~ 17711676 (-)
XLOC_001136 cfap97 coding downstream 54383 17681044 ~ 17693273 (-)
XLOC_001134 si:dkey-256e7.5 coding downstream 72619 17667933 ~ 17675037 (-)
XLOC_001140 NA coding upstream 75818 17879432 ~ 17885732 (-)
XLOC_001141 NA coding upstream 169265 17972879 ~ 17975272 (-)
XLOC_001142 CR391953.1 coding upstream 198953 18002567 ~ 18004302 (-)
XLOC_001143 AL929210.2 coding upstream 258068 18061682 ~ 18063637 (-)
XLOC_001144 NA coding upstream 308742 18112356 ~ 18237940 (-)
XLOC_001130 BX537280.1 non-coding downstream 281201 17465956 ~ 17466455 (-)
XLOC_001129 NA non-coding downstream 386378 17330266 ~ 17361278 (-)
XLOC_001128 BX928751.7 non-coding downstream 806226 16941215 ~ 16941430 (-)
XLOC_001127 BX928751.2 non-coding downstream 808275 16939166 ~ 16939381 (-)
XLOC_001126 BX928751.3 non-coding downstream 810023 16937417 ~ 16937633 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000300_05982822_06013144 SORBS2A, SORBS2 coding CI01000300 null 5982379 ~ 6013144 (-)