RNA id: TCONS_00001812


Basic Information

Item Value
RNA id TCONS_00001812
length 872
lncRNA type lincRNA
GC content 0.39
exon number 4
gene id XLOC_001142
representative True

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 18002567 ~ 18004302 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

attttatcacacgtgttcacaagcacattcagcaatatgtgtataaatgtatgtggccgagcagtataacgaaatagtaataaTTTATTGTTGTGTCTTAGAATAATttacaaaaaggaatcggttttaggcggattcgactctttactgttctaaggagccgattcatagaaccgagccgactcgattcgaccttcaccaggcaagcaacggctcttctaatttgaaatccacctgtcgccttttcctccagtgaattcatcctcggtaagtgtttaaaagtcaaattctgttcgttaaaggattgttttgtgtatatttccgtgtagtgtgtgtgtaatttaaaataattaaccaagttacttcagttgtaggttcttatgtcacgttattcgacgccagaccgtgtttgtagtgtttgcgaggtattagataacGTTAAGTGAGTTTATCttaagtgagtttttgaccatagtaacgttacctgaaaaaaaaaacttttacttgGGGTTAACTACATTAATGAATTctgtatttcagcacaacactgagatgaaggcaaagtcaccatgaaaagttaaacgtttaacgttaagctacagcaattgatgttgaaaaactgatgctaccaatctctcctcacttgattattcaagtagcgacgcagtggcacagtaggtagtgctgtcgcttcacagcaagaaggttgctggttcaagcctcgactgggtcagttggctgaatacaatggcataatgattctgcttgctcacaggagctcagattgtgatgaacctggaatgcgacaccagttactcttaagtcaagaaccaaataaagcacagatgtggagggatctacaactaaactaa

Function

GO:

id name namespace
GO:0045995 regulation of embryonic development biological_process
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0016070 RNA metabolic process biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0018130 heterocycle biosynthetic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0065007 biological regulation biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:1903225 negative regulation of endodermal cell differentiation biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:1901362 organic cyclic compound biosynthetic process biological_process
GO:0010467 gene expression biological_process
GO:0010468 regulation of gene expression biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0050789 regulation of biological process biological_process
GO:0050794 regulation of cellular process biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:0060795 cell fate commitment involved in formation of primary germ layer biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0042664 negative regulation of endodermal cell fate specification biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0043169 cation binding molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG: NA

Ensembl:

ensembl_id ENSDART00000194184

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00002937 lncRNA downstream 27295 17972879 ~ 17975272 (-) False XLOC_001141
TCONS_00003381 lncRNA downstream 27518 17973306 ~ 17975049 (-) True XLOC_001141
TCONS_00003380 lncRNA downstream 116835 17879432 ~ 17885732 (-) True XLOC_001140
TCONS_00001800 lncRNA downstream 327597 17672760 ~ 17674970 (-) True XLOC_001134
TCONS_00002936 lncRNA downstream 641289 17330266 ~ 17361278 (-) False XLOC_001129
TCONS_00001815 lncRNA upstream 57380 18061682 ~ 18063577 (-) False XLOC_001143
TCONS_00001814 lncRNA upstream 57380 18061682 ~ 18063577 (-) False XLOC_001143
TCONS_00001816 lncRNA upstream 57380 18061682 ~ 18063637 (-) True XLOC_001143
TCONS_00003382 lncRNA upstream 108054 18112356 ~ 18237813 (-) False XLOC_001144
TCONS_00002938 lncRNA upstream 129721 18134023 ~ 18134511 (-) True XLOC_001145
TCONS_00001810 mRNA downstream 198953 17747656 ~ 17803614 (-) False XLOC_001139
TCONS_00001811 mRNA downstream 204765 17747949 ~ 17797802 (-) True XLOC_001139
TCONS_00001809 mRNA downstream 266706 17721853 ~ 17735861 (-) True XLOC_001138
TCONS_00001808 mRNA downstream 287074 17712691 ~ 17715493 (-) True XLOC_001135
TCONS_00001805 mRNA downstream 290891 17699477 ~ 17711676 (-) False XLOC_001137
TCONS_00001819 mRNA upstream 247033 18251335 ~ 18336878 (-) False XLOC_001147
TCONS_00001821 mRNA upstream 359531 18363833 ~ 18446161 (-) True XLOC_001148
TCONS_00001822 mRNA upstream 571445 18575747 ~ 18592068 (-) False XLOC_001149
TCONS_00001823 mRNA upstream 573949 18578251 ~ 18585046 (-) False XLOC_001149
TCONS_00001825 mRNA upstream 589844 18594146 ~ 18615063 (-) False XLOC_001150
TCONS_00001806 other downstream 299757 17699482 ~ 17702810 (-) False XLOC_001137
TCONS_00001795 other downstream 455300 17543541 ~ 17547267 (-) False XLOC_001131
TCONS_00001792 other downstream 536112 17465956 ~ 17466455 (-) True XLOC_001130
TCONS_00001790 other downstream 1061137 16941215 ~ 16941430 (-) True XLOC_001128
TCONS_00001789 other downstream 1063186 16939166 ~ 16939381 (-) True XLOC_001127
TCONS_00001817 other upstream 183310 18187612 ~ 18237671 (-) False XLOC_001144
TCONS_00001818 other upstream 230205 18234507 ~ 18237587 (-) True XLOC_001144
TCONS_00001820 other upstream 248312 18252614 ~ 18336838 (-) True XLOC_001147
TCONS_00001824 other upstream 580646 18584948 ~ 18587198 (-) True XLOC_001149
TCONS_00001826 other upstream 601333 18605635 ~ 18614974 (-) True XLOC_001150

Expression Profile

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