RNA id: TCONS_00001820


Basic Information

Item Value
RNA id TCONS_00001820
length 776
RNA type nonsense_mediated_decay
GC content 0.46
exon number 3
gene id XLOC_001147
representative True

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 18251335 ~ 18336878 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TGCACGCATAGCCATAAAAGTGCAGACCCCGACACACGAAAGCCCGGACGAGAGAACCGAGGAAAGTTGTCCGGGTCGCACAACTTACCCAGACCTCACGAAGAGATGAGATCCCACCGGAGGAACGCGCGCCACCAAAACTGCACGGTTTATTTCGTTGATTGAGAAAAAGTTTCATGAAGATATACAATGTTTATGAATGGGAGTTCTCTGAACAGCTCTGCACTGGACCCTAGCGAGCAAGCACTTCAGCGGCCGCCCTGGGTCACTACTACTCTCGGGTGTTTCCTCATATTCACTATAGTGGTGGATATTTTGGGAAACCTGCTGGTGATTTTCTCCGTCTACAGAAACAAGAAACTTCGGAACGCAGgttttggagacatatgcatGACCATCTGGGCCATAAGAATATAAcctgtttggatataacttttttgaccacactctgttattattgttcatttattatagTTTGCtgcaaatctttgagcttaacaaacagaattaaatatgtaggcttttggatgtcttcagtggtgtgggaacaacaccgtttccttatccaagaaaataaaggagtaaagagtgagAGTAAAGAGGAAGAGAAattaaagaggccaaatggaggaggctcattctttgtCCTTGCGCTACAGATGGTAACATTTTTGTGGTGAGTTTGGCAGTGGCGGACCTGGTGGTGGCCATTTACCCATATCCGCTGGTCTTGACCTCCATATTTCACCGGGGCTGGAACCTGGGCTACATGCACT

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0048511 rhythmic process biological_process
GO:0007165 signal transduction biological_process
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0008502 melatonin receptor activity molecular_function
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-990415-155 Predicted to enable G protein-coupled receptor activity. Predicted to be involved in G protein-coupled receptor signaling pathway. Predicted to act upstream of or within rhythmic process and signal transduction. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Is expressed in female organism. Orthologous to human MTNR1A (melatonin receptor 1A).

Ensembl:

ensembl_id ENSDART00000134561

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00003385 lncRNA downstream 14674 18186821 ~ 18237940 (-) False XLOC_001144
TCONS_00003392 lncRNA downstream 14674 18233995 ~ 18237940 (-) False XLOC_001144
TCONS_00003391 lncRNA downstream 14674 18233995 ~ 18237940 (-) False XLOC_001144
TCONS_00003382 lncRNA downstream 14801 18112356 ~ 18237813 (-) False XLOC_001144
TCONS_00003390 lncRNA downstream 14844 18230296 ~ 18237770 (-) False XLOC_001144
TCONS_00001840 lncRNA upstream 474053 18810891 ~ 18811483 (-) False XLOC_001153
TCONS_00001837 lncRNA upstream 474053 18810891 ~ 18811487 (-) False XLOC_001153
TCONS_00001839 lncRNA upstream 474056 18810894 ~ 18811484 (-) True XLOC_001153
TCONS_00003393 lncRNA upstream 597084 18933922 ~ 18936968 (-) True XLOC_001155
TCONS_00002942 lncRNA upstream 605561 18942399 ~ 18945609 (-) False XLOC_001156
TCONS_00001810 mRNA downstream 449000 17747656 ~ 17803614 (-) False XLOC_001139
TCONS_00001811 mRNA downstream 454812 17747949 ~ 17797802 (-) True XLOC_001139
TCONS_00001809 mRNA downstream 516753 17721853 ~ 17735861 (-) True XLOC_001138
TCONS_00001808 mRNA downstream 537121 17712691 ~ 17715493 (-) True XLOC_001135
TCONS_00001805 mRNA downstream 540938 17699477 ~ 17711676 (-) False XLOC_001137
TCONS_00001821 mRNA upstream 26995 18363833 ~ 18446161 (-) True XLOC_001148
TCONS_00001822 mRNA upstream 238909 18575747 ~ 18592068 (-) False XLOC_001149
TCONS_00001823 mRNA upstream 241413 18578251 ~ 18585046 (-) False XLOC_001149
TCONS_00001825 mRNA upstream 257308 18594146 ~ 18615063 (-) False XLOC_001150
TCONS_00001827 mRNA upstream 305279 18642117 ~ 18772311 (-) False XLOC_001151
TCONS_00001817 other downstream 14943 18187612 ~ 18237671 (-) False XLOC_001144
TCONS_00001818 other downstream 15027 18234507 ~ 18237587 (-) True XLOC_001144
TCONS_00001806 other downstream 549804 17699482 ~ 17702810 (-) False XLOC_001137
TCONS_00001795 other downstream 705347 17543541 ~ 17547267 (-) False XLOC_001131
TCONS_00001792 other downstream 786159 17465956 ~ 17466455 (-) True XLOC_001130
TCONS_00001824 other upstream 248110 18584948 ~ 18587198 (-) True XLOC_001149
TCONS_00001826 other upstream 268797 18605635 ~ 18614974 (-) True XLOC_001150
TCONS_00001833 other upstream 379340 18716178 ~ 18752464 (-) False XLOC_001151
TCONS_00001834 other upstream 389521 18726359 ~ 18741618 (-) True XLOC_001151
TCONS_00001836 other upstream 474053 18810891 ~ 18811484 (-) False XLOC_001153

Expression Profile

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