RNA id: TCONS_00001826


Basic Information

Item Value
RNA id TCONS_00001826
length 770
RNA type processed_transcript
GC content 0.37
exon number 2
gene id XLOC_001150
representative True

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 18594146 ~ 18615063 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGATTTGTATCGCGCTCTCGTGATTCAGCCTGTTGCTTTCGTCCGCGCTCCTTTATAACGGCGCAATTTTGACTTGAGGAATATTTACTGCCATAATTCCACTGGAAGCAGCCATGCTCACGTGTGATCCAAAACCAGACATGGTGAGTACTGTTTTTGAGGTAAAGTTTCTATATCAATTGACTGTTAAGAAACgattccacacacactcacacacacaaaataggTTTTGAAGATTATTGGAGTGTGCTTTACAAGAAAACTCTGGCAGTCTTCTAGTTTTGCTCTTTATATACAATGAACTTACTTTAAAACTGACCTAAAACAGCTTGTACAACTGAACAATTAAGTTGAAACGtggtttattaatataaaaacatatgttgtcatgacttattgatcataCGAAGTGTAAAAATAGTGCTTTTTGATATATACAGTGTCCCACGTTTCATTCCTGTTCATGCACTCCACTGAATATCAATGAAAGCATGTCCTGGGTCACTTTACTTTGAATGGACTACAGTTGATTAGCACCTATAGCACCGGCAGtgtcacacacaaacaacacacctTCAAACAGCACAGCATATTTGTCTGTTTTGTGTTTGCAAGAGTATGTGCTTGTATTGAAGATCTGATGGGATTGTGCTGAGTTTTTAAGCACTTTCTTTGTACAAACGTTTAGCCCTGTGATTTTCTTATAAAAATAACTCTCTCAAATATGTAATAAATtgaaatgacactgggaaaaagtatttaacacatga

Function

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0043249 erythrocyte maturation biological_process
GO:0001227 DNA-binding transcription repressor activity, RNA polymerase II-specific molecular_function
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003682 chromatin binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function

KEGG:

id description
ko05202 Transcriptional misregulation in cancer
ko03000 Transcription factors

ZFIN:

id description
ZDB-GENE-011116-1 Enables DNA-binding transcription repressor activity, RNA polymerase II-specific and chromatin binding activity. Acts upstream of or within erythrocyte maturation. Is expressed in hatching gland; hematopoietic cell; intermediate cell mass of mesoderm; posterior lateral mesoderm; and pronephric duct. Orthologous to human KLF3 (Kruppel like factor 3).

Ensembl:

ensembl_id ENSDART00000139550

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00003392 lncRNA downstream 367695 18233995 ~ 18237940 (-) False XLOC_001144
TCONS_00003391 lncRNA downstream 367695 18233995 ~ 18237940 (-) False XLOC_001144
TCONS_00003390 lncRNA downstream 367865 18230296 ~ 18237770 (-) False XLOC_001144
TCONS_00003389 lncRNA downstream 367877 18230296 ~ 18237758 (-) False XLOC_001144
TCONS_00003388 lncRNA downstream 367916 18217454 ~ 18237719 (-) False XLOC_001144
TCONS_00001840 lncRNA upstream 195917 18810891 ~ 18811483 (-) False XLOC_001153
TCONS_00001837 lncRNA upstream 195917 18810891 ~ 18811487 (-) False XLOC_001153
TCONS_00001839 lncRNA upstream 195920 18810894 ~ 18811484 (-) True XLOC_001153
TCONS_00003393 lncRNA upstream 318948 18933922 ~ 18936968 (-) True XLOC_001155
TCONS_00002942 lncRNA upstream 327425 18942399 ~ 18945609 (-) False XLOC_001156
TCONS_00001822 mRNA downstream 13567 18575747 ~ 18592068 (-) False XLOC_001149
TCONS_00001823 mRNA downstream 20589 18578251 ~ 18585046 (-) False XLOC_001149
TCONS_00001821 mRNA downstream 159474 18363833 ~ 18446161 (-) True XLOC_001148
TCONS_00001819 mRNA downstream 268757 18251335 ~ 18336878 (-) False XLOC_001147
TCONS_00001810 mRNA downstream 802021 17747656 ~ 17803614 (-) False XLOC_001139
TCONS_00001827 mRNA upstream 27143 18642117 ~ 18772311 (-) False XLOC_001151
TCONS_00001829 mRNA upstream 29230 18644204 ~ 18752981 (-) False XLOC_001151
TCONS_00001828 mRNA upstream 29230 18644204 ~ 18752981 (-) False XLOC_001151
TCONS_00001832 mRNA upstream 30374 18645348 ~ 18772241 (-) False XLOC_001151
TCONS_00001831 mRNA upstream 30374 18645348 ~ 18772241 (-) False XLOC_001151
TCONS_00001824 other downstream 18437 18584948 ~ 18587198 (-) True XLOC_001149
TCONS_00001820 other downstream 268797 18252614 ~ 18336838 (-) True XLOC_001147
TCONS_00001817 other downstream 367964 18187612 ~ 18237671 (-) False XLOC_001144
TCONS_00001818 other downstream 368048 18234507 ~ 18237587 (-) True XLOC_001144
TCONS_00001806 other downstream 902825 17699482 ~ 17702810 (-) False XLOC_001137
TCONS_00001833 other upstream 101204 18716178 ~ 18752464 (-) False XLOC_001151
TCONS_00001834 other upstream 111385 18726359 ~ 18741618 (-) True XLOC_001151
TCONS_00001836 other upstream 195917 18810891 ~ 18811484 (-) False XLOC_001153
TCONS_00001850 other upstream 746231 19361205 ~ 19366174 (-) False XLOC_001163
TCONS_00001851 other upstream 754023 19368997 ~ 19402815 (-) True XLOC_001163

Expression Profile

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