RNA id: TCONS_00003391


Basic Information

Item Value
RNA id TCONS_00003391
length 873
lncRNA type antisense_over
GC content 0.37
exon number 3
gene id XLOC_001144
representative False

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 18112356 ~ 18237940 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

caataataaaaaactgcttaaatATTTTGCAATCTATGAAGCAGATGAGATATTTAGCagtgaatgtttattttattatactttatttttatttcaccctCTGTGTTCTGAGGAATTAATCTGTTGCATTCTAAATGAATGAACGTCCAGTGAGTTCTGAATGGACGTGAAACAAGTCACATGACAGAGGATGCATCATCCAGATTGGTGGCTGTTGCGTAGTGGCAGCCATGTTGATTTGTGATTCACGCAAACATTCACACAGCGACTCAAATGACTTGCAGTCTTGACAGACAGGACGGCAATTCACCCACACACCATCAACCAAGTGAATGACTATCTGAACTCGGCTCGGCTTCATCGCTCTCAGTGGTGAAGATGGATTGCATTCGTAGAGATGAAGAGCGGGAGAAAAAATTTAAAACATCTGGGGTTTTTAGAGCGAGTCCATGGGAAAAGATCTCTCGGCAAGGAAAGACGTTTTATCATTTGGAGAAATGAATGCACTGCATGATCCTCCTCACTCACTGTTTAGGtgagaaatgttcatttttgcaaAGCCAGAAACATCTTTCTGTGTCGTTGGCAAATTTATAGTTTTAACTAACAGCAGGGTTTTCACGGGTCGGTAAATTTCTGGAACATCAAGGAATTTTTAAAAGTTCCATTCCAAATACTATATGTCAGAAAATATTCTAAGTCATGGAAAATCtgaatattttttgcttgtcgcTTTACAGTAAATGTTACTTTCCATTTatcaacacacacatttgtattttttcttgttgttgttgatgtttcaTACGTATTGTAATGGTAATTCTATTTTTCAGCTCCATTTTATTCCTCTCACGCTAATCAACTTGGAGC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0006354 DNA-templated transcription, elongation biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006396 RNA processing biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0032784 regulation of DNA-templated transcription, elongation biological_process
GO:0032786 positive regulation of DNA-templated transcription, elongation biological_process
GO:0008380 RNA splicing biological_process
GO:0044665 MLL1/2 complex cellular_component
GO:0046540 U4/U6 x U5 tri-snRNP complex cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0044428 obsolete nuclear part cellular_component
GO:0044446 obsolete intracellular organelle part cellular_component
GO:0044451 obsolete nucleoplasm part cellular_component
GO:0071339 MLL1 complex cellular_component
GO:0030532 small nuclear ribonucleoprotein complex cellular_component
GO:0005634 nucleus cellular_component
GO:0005654 nucleoplasm cellular_component
GO:0016607 nuclear speck cellular_component
GO:0008023 transcription elongation factor complex cellular_component
GO:0097525 spliceosomal snRNP complex cellular_component
GO:0043226 organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0017069 snRNA binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
ko00230 Purine metabolism
ko00240 Pyrimidine metabolism
ko03020 RNA polymerase
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00002941 lncRNA downstream 58320 18173615 ~ 18175675 (-) True XLOC_001146
TCONS_00003384 lncRNA downstream 59013 18172250 ~ 18174982 (-) False XLOC_001146
TCONS_00002940 lncRNA downstream 61215 18171439 ~ 18172780 (-) False XLOC_001146
TCONS_00002939 lncRNA downstream 61484 18171439 ~ 18172511 (-) False XLOC_001146
TCONS_00003383 lncRNA downstream 61858 18171716 ~ 18172137 (-) False XLOC_001146
TCONS_00001840 lncRNA upstream 572951 18810891 ~ 18811483 (-) False XLOC_001153
TCONS_00001837 lncRNA upstream 572951 18810891 ~ 18811487 (-) False XLOC_001153
TCONS_00001839 lncRNA upstream 572954 18810894 ~ 18811484 (-) True XLOC_001153
TCONS_00003393 lncRNA upstream 695982 18933922 ~ 18936968 (-) True XLOC_001155
TCONS_00002942 lncRNA upstream 704459 18942399 ~ 18945609 (-) False XLOC_001156
TCONS_00001810 mRNA downstream 430381 17747656 ~ 17803614 (-) False XLOC_001139
TCONS_00001811 mRNA downstream 436193 17747949 ~ 17797802 (-) True XLOC_001139
TCONS_00001809 mRNA downstream 498134 17721853 ~ 17735861 (-) True XLOC_001138
TCONS_00001808 mRNA downstream 518502 17712691 ~ 17715493 (-) True XLOC_001135
TCONS_00001805 mRNA downstream 522319 17699477 ~ 17711676 (-) False XLOC_001137
TCONS_00001819 mRNA upstream 13395 18251335 ~ 18336878 (-) False XLOC_001147
TCONS_00001821 mRNA upstream 125893 18363833 ~ 18446161 (-) True XLOC_001148
TCONS_00001822 mRNA upstream 337807 18575747 ~ 18592068 (-) False XLOC_001149
TCONS_00001823 mRNA upstream 340311 18578251 ~ 18585046 (-) False XLOC_001149
TCONS_00001825 mRNA upstream 356206 18594146 ~ 18615063 (-) False XLOC_001150
TCONS_00001806 other downstream 531185 17699482 ~ 17702810 (-) False XLOC_001137
TCONS_00001795 other downstream 686728 17543541 ~ 17547267 (-) False XLOC_001131
TCONS_00001792 other downstream 767540 17465956 ~ 17466455 (-) True XLOC_001130
TCONS_00001790 other downstream 1292565 16941215 ~ 16941430 (-) True XLOC_001128
TCONS_00001789 other downstream 1294614 16939166 ~ 16939381 (-) True XLOC_001127
TCONS_00001820 other upstream 14674 18252614 ~ 18336838 (-) True XLOC_001147
TCONS_00001824 other upstream 347008 18584948 ~ 18587198 (-) True XLOC_001149
TCONS_00001826 other upstream 367695 18605635 ~ 18614974 (-) True XLOC_001150
TCONS_00001833 other upstream 478238 18716178 ~ 18752464 (-) False XLOC_001151
TCONS_00001834 other upstream 488419 18726359 ~ 18741618 (-) True XLOC_001151

Expression Profile

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