RNA id: TCONS_00003384


Basic Information

Item Value
RNA id TCONS_00003384
length 2733
lncRNA type inter_gene
GC content 0.33
exon number 1
gene id XLOC_001146
representative False

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 18171439 ~ 18175675 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

aggttcattgcgatcccaaggttcactgcggttttccacaaggtaagtaaaaagtaaacaaataaacacgatttgttgataaagcatgtactgtaaactagcgacgttatctaattacatcaagttcatttattaaaaacatatttttctcacatataacgttggtcatgcattagaacaatatatacattttaagataaggaacagtgtaaccagattgttgttttccacaatagaattcgtgcaaaatctatatataatatgcaatatgcaactctaataatacaaatgtattcgtaattgtttcaatattaaataacatcaagtgtttccaaaggtttattgtaaaaacaattattttccatgcctttaaAGGAAAAAGGCAGACATTTTGCCCGTCtgagcacattttattcattgtacaacacaaaactaaacaaaaaaatagcttaatctaccacacacacacacacacacacatatatatatatatatatatatatatatatatatatatatatatatatacatatacaagtgTAAATTATTAGGTGTTCACTGTtcagatatgaatattttttctttgctcttttcaggttctttagatttctttaaaaatccaattttgttttctaataagcaaaaagtaaaatcactttacccatgtttatatgttaaattgcacttgtctctctctctatctctgttaacacatttatatttgtttgattaattcttGTGTCTTTCAGCCTGTTTCTGCCTATCACCATGAGTGATTCCTCAATACTCAGATTTATCATCAAGATCTCAATTATAAGCTCAAGTTTTGATGACAACTTGGTGATCTGCAGAAAGCACCACCATGTAAGGAAGGCCAAGACCACTCTGGAATCAGTCAAGGGTTAGTGAAGTTTTTCATTCCATGTATATGAAATGTCTACATTGTTTAGGCATATGTGATTGTAtgagataaaatgcatttattctttcactactattgtaataacagaaagaaacgcattagttttactattactattgcttatgacaaacattaaaaaactacagcataagctcacaaaatattgtggcctaactgtttaaaactaattgttctgggtgttgatagtggccaaccattttttttctttttcagaaagtattttgttttgtctgattttataacaccttataggccatcaactgtccacattggggtttaggaaattagaactgcttatgctgcttgtctactagtcttaggataagttagaaatgttataaatgtacatttttttgttgtttttatctggtacagctcataggaactccaatcttcccaactgtgagagggccttgctccagtgactgtcagtgtgtacttcattgtttccattagtccctgtatctgtagacctaggtgacagtgggctagagtaaaattttggttttatttaaactaaggcatactgatggccttttaatctcagatttggtcatgcaagtattaatatatcctaaagtatttttatattctttccattggtggaaaagatgttggtataataatttttaatggactgctaagatctcagcagacatttttctgagaTATTCTTGAGTGGGAGTCTGTGCAATACAAGGTGGATAGTATTTGCAAGGAAGAGCCCTTCATCTGTTCTGCTTCCACACTAGATATACTGCCAATTTAAGTAGATATGAACCATAAGCATAACCATTTCAAGAATGCACGaggtactttaaactgtatgtgttgaaactaaattaacaagaaaacagcTCTGTGATGTTCACCTAAGAAAATTAgattagaagatataaactgTTATGCACTTGTTCTGTACTGTTTCATTCCTTTTTCAAACACTGGCATTTTTGAAGGTTTATTTACAGCTAAGGATTAAGAATTGACAGGAAGATTTGTGGACTACATCAACTAATGACACTACCTCCAAAGAGTTGCAAAAAGCTGTCCAAAGTTTCAGCACCATCTTTAAGCCCATGATTTTAGTGTGTTTCATGCCTAATCACATGAGTTTATATCTGACATAGATGAACTATGTGATTGTCTTAAACTGATCTACAAGTAAATGCCAAAACTTattggtttacttatttatttgtttgtttgtttgtttgtttgtttgtttgtttgtttgtttgtttgtatatgttaacCAGGTGAAATGGAGTGAGGCATACCAGGATATGCCTGGTTTTACTTTTGGGAAGGAGGTTGAACAGTGCAATATTTCTTCTATAGGATTGGAGTGACCAGACATGCTACTGTAACTCTCATGGTCATGTGCTGGAATTAGCAGATATTCAACAATTTGGCCATCTCTCTGACCTATTGATATCAGAAGGTAACAATATCCAGTTGAATTTGTTTTGGTTGTTCAGTAAcctattttaataatattgtgatttttGATTGCTTATCACTGTAGACCGCAACAGCTCTGCAAAGCAAGTTGCAAAACAGAATCCATGAAACTGGCAGTGACTGGAAACCAATTGGAAGACTTTGGTCTGTGATGTAGAGGAGTGGGCAGAGGGTGAggaaattcttattaatattacatgtagtcatgaaaaattgtgttactattactgtcatttttttttttcagtagcagaagcaaagacaacaaaaaacagaagtgatatggaTGTCTTCGTCATATTGCATGGTATGTACACTAGACTTCT

Function

GO:

id name namespace
GO:0006607 NLS-bearing protein import into nucleus biological_process
GO:0030154 cell differentiation biological_process
GO:0030182 neuron differentiation biological_process
GO:0051239 regulation of multicellular organismal process biological_process
GO:0048869 cellular developmental process biological_process
GO:0045595 regulation of cell differentiation biological_process
GO:2000026 regulation of multicellular organismal development biological_process
GO:0050767 regulation of neurogenesis biological_process
GO:0050793 regulation of developmental process biological_process
GO:0007399 nervous system development biological_process
GO:0045664 regulation of neuron differentiation biological_process
GO:0060284 regulation of cell development biological_process
GO:0022008 neurogenesis biological_process
GO:0048699 generation of neurons biological_process
GO:0051960 regulation of nervous system development biological_process

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00003383 lncRNA downstream 113 18171716 ~ 18172137 (-) False XLOC_001146
TCONS_00002938 lncRNA downstream 37739 18134023 ~ 18134511 (-) True XLOC_001145
TCONS_00001816 lncRNA downstream 108613 18061682 ~ 18063637 (-) True XLOC_001143
TCONS_00001815 lncRNA downstream 108673 18061682 ~ 18063577 (-) False XLOC_001143
TCONS_00001814 lncRNA downstream 108673 18061682 ~ 18063577 (-) False XLOC_001143
TCONS_00003385 lncRNA upstream 11839 18186821 ~ 18237940 (-) False XLOC_001144
TCONS_00003386 lncRNA upstream 25026 18200008 ~ 18237713 (-) False XLOC_001144
TCONS_00003387 lncRNA upstream 25026 18200008 ~ 18237758 (-) False XLOC_001144
TCONS_00003388 lncRNA upstream 42472 18217454 ~ 18237719 (-) False XLOC_001144
TCONS_00003389 lncRNA upstream 55314 18230296 ~ 18237758 (-) False XLOC_001144
TCONS_00001810 mRNA downstream 368636 17747656 ~ 17803614 (-) False XLOC_001139
TCONS_00001811 mRNA downstream 374448 17747949 ~ 17797802 (-) True XLOC_001139
TCONS_00001809 mRNA downstream 436389 17721853 ~ 17735861 (-) True XLOC_001138
TCONS_00001808 mRNA downstream 456757 17712691 ~ 17715493 (-) True XLOC_001135
TCONS_00001805 mRNA downstream 460574 17699477 ~ 17711676 (-) False XLOC_001137
TCONS_00001819 mRNA upstream 76353 18251335 ~ 18336878 (-) False XLOC_001147
TCONS_00001821 mRNA upstream 188851 18363833 ~ 18446161 (-) True XLOC_001148
TCONS_00001822 mRNA upstream 400765 18575747 ~ 18592068 (-) False XLOC_001149
TCONS_00001823 mRNA upstream 403269 18578251 ~ 18585046 (-) False XLOC_001149
TCONS_00001825 mRNA upstream 419164 18594146 ~ 18615063 (-) False XLOC_001150
TCONS_00001806 other downstream 469440 17699482 ~ 17702810 (-) False XLOC_001137
TCONS_00001795 other downstream 624983 17543541 ~ 17547267 (-) False XLOC_001131
TCONS_00001792 other downstream 705795 17465956 ~ 17466455 (-) True XLOC_001130
TCONS_00001790 other downstream 1230820 16941215 ~ 16941430 (-) True XLOC_001128
TCONS_00001789 other downstream 1232869 16939166 ~ 16939381 (-) True XLOC_001127
TCONS_00001817 other upstream 12630 18187612 ~ 18237671 (-) False XLOC_001144
TCONS_00001818 other upstream 59525 18234507 ~ 18237587 (-) True XLOC_001144
TCONS_00001820 other upstream 77632 18252614 ~ 18336838 (-) True XLOC_001147
TCONS_00001824 other upstream 409966 18584948 ~ 18587198 (-) True XLOC_001149
TCONS_00001826 other upstream 430653 18605635 ~ 18614974 (-) True XLOC_001150

Expression Profile

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