RNA id: TCONS_00001806


Basic Information

Item Value
RNA id TCONS_00001806
length 815
RNA type processed_transcript
GC content 0.44
exon number 4
gene id XLOC_001137
representative False

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 17699471 ~ 17711676 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TGTATTTAGTGCAGGGTGTGTACAGTTATCACCACTACATGCAGGATCGTGTGGATGACGATGGCTGGGGATGTGCATATCGTTCCCTTCAGACCATCTGCTCTTGGTTCCAGCAGCAAGGATATGTGGAGACAGCTGTTCCCACACACACGCAGATCCAGCAGGCTCTTGTGGATGTTGGGGATAAAGAGCCACGTTTTGTGGGTTCACGTCAGTGGATCGGCTCCATTGAAGTTCAGGCTGTCCTTAACCAATTACTGGGCGTCACCTCAAAGATTATGTTTGTCAGGTGGGGGTGTACTTGCACACACTATTCTAGGCGTAGCGTGGAGTGAGAACACTGGAGAAATACGTTTTCTTATCCTGGACCCTCATTATACTGGTGGAGAGGACCTGCAGATCATTACTGACAAGGGATGGTGTGGTTGGAAGGGGCCTGAGTTCTGGGATCAAAATGCCTATTACAACCTCTGCCTTCCACAGAGACCCAAGACCGTCTGAGTCACGTGCATGACACTTATTCGGTCTCCCTCATCTTGTGAGTTCAGCAGTTCACAGGAAGTCTTATTGTTTCAATAAGTGCAAAAAGACATGTCACTGTAAGAAGTGATTTATTATTCTTTGTACTTCCTGTTTTAACATCCTCTTTGAGTCACGCTAAATGTACTGGTTTCAGAAATGATGTTCTGCAAGGAATAACATGGATGATATTAGTAACATAAAATCTTTTAAGTTCCTCATAATAACGAAATATACCTGCGATATCTACCTGCACTTCAATAAAACGAACAGCAGCTAAAATATCAttcgaaaac

Function

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0071567 UFM1 hydrolase activity molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0016790 thiolester hydrolase activity molecular_function
GO:0008233 peptidase activity molecular_function
GO:0008234 cysteine-type peptidase activity molecular_function

KEGG:

id description
ko01002 Peptidases and inhibitors

ZFIN:

id description
ZDB-GENE-030131-8726 Predicted to enable UFM1 hydrolase activity and thiolester hydrolase activity. Predicted to be involved in proteolysis. Predicted to be located in endoplasmic reticulum and nucleus. Is expressed in hatching gland; myotome; notochord; polster; and segmental plate. Human ortholog(s) of this gene implicated in Beukes hip dysplasia. Orthologous to human UFSP2 (UFM1 specific peptidase 2).

Ensembl:

ensembl_id ENSDART00000145162

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00001800 lncRNA downstream 24512 17672760 ~ 17674970 (-) True XLOC_001134
TCONS_00002936 lncRNA downstream 338204 17330266 ~ 17361278 (-) False XLOC_001129
TCONS_00001791 lncRNA downstream 338204 17330266 ~ 17361278 (-) True XLOC_001129
TCONS_00003379 lncRNA downstream 338281 17330266 ~ 17361201 (-) False XLOC_001129
TCONS_00001783 lncRNA downstream 1010593 16679330 ~ 16688889 (-) True XLOC_001121
TCONS_00003380 lncRNA upstream 176622 17879432 ~ 17885732 (-) True XLOC_001140
TCONS_00002937 lncRNA upstream 270069 17972879 ~ 17975272 (-) False XLOC_001141
TCONS_00003381 lncRNA upstream 270496 17973306 ~ 17975049 (-) True XLOC_001141
TCONS_00001813 lncRNA upstream 299757 18002567 ~ 18004302 (-) False XLOC_001142
TCONS_00001812 lncRNA upstream 299757 18002567 ~ 18004302 (-) True XLOC_001142
TCONS_00001802 mRNA downstream 6209 17681044 ~ 17693273 (-) False XLOC_001136
TCONS_00001803 mRNA downstream 9624 17681045 ~ 17689858 (-) True XLOC_001136
TCONS_00001799 mRNA downstream 24445 17667933 ~ 17675037 (-) False XLOC_001134
TCONS_00001798 mRNA downstream 36374 17652388 ~ 17663108 (-) True XLOC_001133
TCONS_00001797 mRNA downstream 49259 17618015 ~ 17650223 (-) True XLOC_001132
TCONS_00001808 mRNA upstream 9881 17712691 ~ 17715493 (-) True XLOC_001135
TCONS_00001809 mRNA upstream 19043 17721853 ~ 17735861 (-) True XLOC_001138
TCONS_00001810 mRNA upstream 44846 17747656 ~ 17803614 (-) False XLOC_001139
TCONS_00001811 mRNA upstream 45139 17747949 ~ 17797802 (-) True XLOC_001139
TCONS_00001819 mRNA upstream 548525 18251335 ~ 18336878 (-) False XLOC_001147
TCONS_00001795 other downstream 152215 17543541 ~ 17547267 (-) False XLOC_001131
TCONS_00001792 other downstream 233027 17465956 ~ 17466455 (-) True XLOC_001130
TCONS_00001790 other downstream 758052 16941215 ~ 16941430 (-) True XLOC_001128
TCONS_00001789 other downstream 760101 16939166 ~ 16939381 (-) True XLOC_001127
TCONS_00001788 other downstream 761849 16937417 ~ 16937633 (-) True XLOC_001126
TCONS_00001817 other upstream 484802 18187612 ~ 18237671 (-) False XLOC_001144
TCONS_00001818 other upstream 531697 18234507 ~ 18237587 (-) True XLOC_001144
TCONS_00001820 other upstream 549804 18252614 ~ 18336838 (-) True XLOC_001147
TCONS_00001824 other upstream 882138 18584948 ~ 18587198 (-) True XLOC_001149
TCONS_00001826 other upstream 902825 18605635 ~ 18614974 (-) True XLOC_001150

Expression Profile

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