RNA id: TCONS_00001798


Basic Information

Item Value
RNA id TCONS_00001798
length 454
RNA type mRNA
GC content 0.47
exon number 3
gene id XLOC_001133
representative True

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 17652388 ~ 17663108 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGCAGCTCCTGGAAGGACACTGCCTAAAGCAGAAGAGGAGCGTCACACATCCATCGCCATTGAAACATGGCTGAAGGACAGATTTAGGGATGGAGCTCAAAGGATGAAGGCAGAGTTTGATAAACTGGATCCTGAAAGCACCGGAAAGGTGAGAGGTGCGGACTTTCTGCAGGTGTTGGGAAAGTTTGATTTGCATCTGAAAAGAGAGCAGCTGGGTCTGTTTCTGTCTCGCTGTGGTCTGAAGATTAAAAAGGGTTGCGTGCAGTATTTGAACTTCCTGCGGACCTTCCAGGACAGAAGCTCAGATGGCATTACTCACAAGATCATCTACAACCCAAAACACCGGTTTCATTCTGTCGAAAACGTCAGCTGTGCTTCATCTCTTAGTGCCATTGAGGCCAAATTAATTCGCCTGTTTCAGTCAGAGTTTCTCTCCCTCCTAAAGACCTTTCAG

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000131559

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00002936 lncRNA downstream 291110 17330266 ~ 17361278 (-) False XLOC_001129
TCONS_00001791 lncRNA downstream 291110 17330266 ~ 17361278 (-) True XLOC_001129
TCONS_00003379 lncRNA downstream 291187 17330266 ~ 17361201 (-) False XLOC_001129
TCONS_00001783 lncRNA downstream 963499 16679330 ~ 16688889 (-) True XLOC_001121
TCONS_00003378 lncRNA downstream 981052 16669825 ~ 16671336 (-) True XLOC_001120
TCONS_00001800 lncRNA upstream 9652 17672760 ~ 17674970 (-) True XLOC_001134
TCONS_00003380 lncRNA upstream 216324 17879432 ~ 17885732 (-) True XLOC_001140
TCONS_00002937 lncRNA upstream 309771 17972879 ~ 17975272 (-) False XLOC_001141
TCONS_00003381 lncRNA upstream 310198 17973306 ~ 17975049 (-) True XLOC_001141
TCONS_00001813 lncRNA upstream 339459 18002567 ~ 18004302 (-) False XLOC_001142
TCONS_00001797 mRNA downstream 2165 17618015 ~ 17650223 (-) True XLOC_001132
TCONS_00001793 mRNA downstream 64836 17537451 ~ 17587552 (-) False XLOC_001131
TCONS_00001796 mRNA downstream 82375 17555944 ~ 17570013 (-) True XLOC_001131
TCONS_00001794 mRNA downstream 82595 17538931 ~ 17569793 (-) False XLOC_001131
TCONS_00001779 mRNA downstream 963365 16673841 ~ 16689023 (-) False XLOC_001121
TCONS_00001799 mRNA upstream 4825 17667933 ~ 17675037 (-) False XLOC_001134
TCONS_00001801 mRNA upstream 14265 17677373 ~ 17713483 (-) False XLOC_001135
TCONS_00001802 mRNA upstream 17936 17681044 ~ 17693273 (-) False XLOC_001136
TCONS_00001803 mRNA upstream 17937 17681045 ~ 17689858 (-) True XLOC_001136
TCONS_00001804 mRNA upstream 36363 17699471 ~ 17711636 (-) False XLOC_001137
TCONS_00001795 other downstream 105121 17543541 ~ 17547267 (-) False XLOC_001131
TCONS_00001792 other downstream 185933 17465956 ~ 17466455 (-) True XLOC_001130
TCONS_00001790 other downstream 710958 16941215 ~ 16941430 (-) True XLOC_001128
TCONS_00001789 other downstream 713007 16939166 ~ 16939381 (-) True XLOC_001127
TCONS_00001788 other downstream 714755 16937417 ~ 16937633 (-) True XLOC_001126
TCONS_00001806 other upstream 36374 17699482 ~ 17702810 (-) False XLOC_001137
TCONS_00001817 other upstream 524504 18187612 ~ 18237671 (-) False XLOC_001144
TCONS_00001818 other upstream 571399 18234507 ~ 18237587 (-) True XLOC_001144
TCONS_00001820 other upstream 589506 18252614 ~ 18336838 (-) True XLOC_001147
TCONS_00001824 other upstream 921840 18584948 ~ 18587198 (-) True XLOC_001149

Expression Profile

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