RNA id: TCONS_00001779


Basic Information

Item Value
RNA id TCONS_00001779
length 2707
RNA type mRNA
GC content 0.37
exon number 9
gene id XLOC_001121
representative False

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 16673841 ~ 16689023 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTTTGTGTCGCACTTCACTCCAGGCACAAGTCATCAGCATAGTTCTCTCGGCCGCCGTACTCACAGAAAGCCTGTTGCAGAAAAACGTTTTCCGGTTGTTAATAACAACACACAAACGTTTTGATTTAGTGTTGGGTCTGTGTGTGATCATGGCAGAGTACACACATGTAAAATCCACCAAACTGGTCCTGAAAGGTTCAAACGATAAaaagaagaaaaagaacaaaGACAAGAAGAGGAAACGAGATGATGGAGAAGACAAGCTGGATATTGTTGGAGGGTGGTGGACGGTGAAGTGCTTCGGTGAGGTCACAGGCACAGTGGCCATTGAGATGCACAAAAACTCCTACATTCATGCACTGGACACTGGACTCTTCACTGTAGGATCTCCACATAAAGAGGATGAAGGTCCAGATCCTCCTGAACAGTTCACAGCTATAAAACTCTCAGATTCCAGGATAGCACTGAAGTCAGGGTATGGGAAGTATTTGGGTATAAACTCAGAGGGAGTTGTTGTTGGCCGATCAGATGCCATAGGCTCCAGAGAGCAGTGGGAACCAGTGTTTCAAAATGGTAAAATGGCCTTGCTTGCTGCAAACAGTTGTTTCATCTCGTACAGTGAGAGCGGAGACATCGTGGCCAAAAACAAGACAGCTGGAGAGGAGGAAATGATCAAGATCCGTTCATGCACAGAAAGGGAGGTGAAGAGGAAAGATGATATTGCAGATGAAGACCGAGGCGATGTCAAGAACTGCGAGCTCAATTATGTAAAGAAGTTCCAGAGTTTTCAGGACCGGAAGCTGAGGCTGAATGAGGAAGACAGCGGTTCACTCAAAAAAGCCAGAACAGATGGAAAGTTCCATGAGGCACTGCTGGACAGgaGGTCAAAGATGAAGGCTGACAGATACTGCAAGTGAAACCAGAAGAAGCACATCATCATTTTTACATCTTCATGGAATTGacattttaatttcacaattttaacTTTATTCTTGCAAATGCAAGTTACAAACTCAAGCAATTCTGGCTGTTTTCTTCATATTTGTCAGATACAGACTTCTAGTCAAAAATGTGAGAAGTCTTGAGAAATGTATATCTCTGAATGTATATCTCTCAAAACACAAtcatacagtcaagcccaaaattattcatacaccTGGTCAATTTTGACTTAGTTACTTAAAGaaatatttgtacttaaagaaatgtatttttttttccatgatgGAAAtgaatgatgcctcttgtacatcgtaTTATCTTTGGAGAAGCCTGTgtcacttttaaaaaaacaacttaataaaaataactttaagtcCGAATTTGCCAgcagtatgaataattttgggcctGACTGTATATCTGCAgggtattttgttgttttattattttctttatcttATGATAGAGACTAGCTTCCagaattttttcatatttttttgtattgattGTAAATGTCATTCATTTCCAAAAATAAATGGATCACAAATTCAGTCTTCCGTATAATCACTTAATTTATTCAAATGTCTCTTAATTGTTATTATgaataattcaatattttttgGTACATATCTTAAAAGACATGAATATGCCTAAAATGTTTGTCTCTTTGTCTTTCTCTTTGTGATGTGATTTAATGTTTTGATGTATATTATAGAAATGTTATTCATACTAAAACCACATTTAAAGTTACAATAATTGACTCTTTAAAAGTTAGTTCACCCGAAAAGGAAAATACTGTCTTGAGTGATAAACAGGGCCCTGGAGGAAAACATCTTCAGCCTCCTGCCTAGACAAGCCTTGTAACTCGCAAAGGCTATGAATGATGGCctgtacaaatatacaaataatacatttactaataaaattaaacatacacTCTGCTGAACATAAGCATGCTCATGTACATGCATGTTTTGTGAGACATCTATAAATGAACTCCACCTCATTATTGTAGGTCAGCTGCGTTTGGGTTCTATTGATTGCCAGCTGATCAACAAAACAGAATTTTTACAGTTAGCACTGGATTACTTCAGGTCAATCATTAATCATTGTAGAAATTCTATTTATAAATTTGAAGCATGTTTGGTCAGGTTGACCATTTATCAAGGGCTCTAATTGTGTTGCAAAAGGCAAAGCAAAACACATAAATATAGTAgattatgcaaaaatatatataaataaattccaGTATATGCATGAACAGCTTATACTGCATCCTCCTTCTCCCAGTAGCTCACCCATGTTGTAGGTCAAGCACATCTGTTCAAATATAAATAGTTTTAGAGACGGATTCAAATtctataatgcaaaaataaaactttattaccACTTTATATGCCAATATACGTAACGCATAAACATATAAtccattaaaaaaattgaaagcaTCAAGCAGCCATAAATATAATGAACTTACTCCCAATAATCAAGACCACATCTTGGTTTGGGTTTTCTGCCAGAGCACACAGTATCTTCTTCTGACAGATCAACTGGAAGCTCCTGGACTTGCTGGTCAACAGTGGAGGGAGGAACCTCAAGGCTACTGTTAAGAGTGTCCTGGTGACAACAACTCTCTACAGTACATGTGATCTCCACAGAGGTTTGATCTAAAGAGAGAaaaacacatttaacatttatataaataaacacccAAACATTTCAATGCGGTTACAAATaatacatagttgaagtcagaattataagc

Function

GO:

id name namespace
GO:0071013 catalytic step 2 spliceosome cellular_component
GO:0055120 striated muscle dense body cellular_component
GO:0005730 nucleolus cellular_component
GO:0051015 actin filament binding molecular_function

KEGG:

id description
ko03041 Spliceosome

ZFIN:

id description
ZDB-GENE-050417-324 Predicted to enable actin filament binding activity. Predicted to act upstream of or within muscle organ development. Predicted to be located in Cajal body. Predicted to be part of catalytic step 2 spliceosome. Predicted to be active in nucleolus and striated muscle dense body. Orthologous to human FRG1 (FSHD region gene 1).

Ensembl:

ensembl_id ENSDART00000178599

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00003378 lncRNA downstream 2505 16669825 ~ 16671336 (-) True XLOC_001120
TCONS_00001778 lncRNA downstream 15988 16655702 ~ 16657853 (-) True XLOC_001119
TCONS_00001776 lncRNA downstream 166058 16506703 ~ 16507783 (-) True XLOC_001118
TCONS_00003377 lncRNA downstream 189939 16482924 ~ 16483902 (-) True XLOC_001117
TCONS_00001774 lncRNA downstream 212443 16460121 ~ 16461398 (-) True XLOC_001116
TCONS_00003379 lncRNA upstream 641243 17330266 ~ 17361201 (-) False XLOC_001129
TCONS_00002936 lncRNA upstream 641243 17330266 ~ 17361278 (-) False XLOC_001129
TCONS_00001791 lncRNA upstream 641243 17330266 ~ 17361278 (-) True XLOC_001129
TCONS_00001800 lncRNA upstream 983737 17672760 ~ 17674970 (-) True XLOC_001134
TCONS_00003380 lncRNA upstream 1190409 17879432 ~ 17885732 (-) True XLOC_001140
TCONS_00001777 mRNA downstream 8797 16654254 ~ 16665044 (-) False XLOC_001119
TCONS_00001775 mRNA downstream 166029 16484211 ~ 16507812 (-) False XLOC_001118
TCONS_00001773 mRNA downstream 279027 16393077 ~ 16394814 (-) True XLOC_001114
TCONS_00001772 mRNA downstream 876178 15623961 ~ 15797663 (-) True XLOC_001111
TCONS_00001768 mRNA downstream 1344564 15293531 ~ 15329277 (-) True XLOC_001108
TCONS_00001793 mRNA upstream 848428 17537451 ~ 17587552 (-) False XLOC_001131
TCONS_00001794 mRNA upstream 849908 17538931 ~ 17569793 (-) False XLOC_001131
TCONS_00001796 mRNA upstream 866921 17555944 ~ 17570013 (-) True XLOC_001131
TCONS_00001797 mRNA upstream 928992 17618015 ~ 17650223 (-) True XLOC_001132
TCONS_00001798 mRNA upstream 963365 17652388 ~ 17663108 (-) True XLOC_001133
TCONS_00001766 other downstream 2024772 14648999 ~ 14649069 (-) True XLOC_001103
TCONS_00001765 other downstream 2034165 14639582 ~ 14639676 (-) True XLOC_001102
TCONS_00001762 other downstream 2080043 14593705 ~ 14593798 (-) True XLOC_001101
TCONS_00001760 other downstream 2113356 14560391 ~ 14560485 (-) True XLOC_001098
TCONS_00001759 other downstream 2120526 14553221 ~ 14553315 (-) True XLOC_001097
TCONS_00001784 other upstream 238701 16927724 ~ 16927939 (-) True XLOC_001122
TCONS_00001785 other upstream 241133 16930156 ~ 16930372 (-) True XLOC_001123
TCONS_00001786 other upstream 243563 16932586 ~ 16932801 (-) True XLOC_001124
TCONS_00001787 other upstream 246372 16935395 ~ 16935611 (-) True XLOC_001125
TCONS_00001788 other upstream 248394 16937417 ~ 16937633 (-) True XLOC_001126

Expression Profile

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