G356384


Basic Information

Item Value
gene id G356384
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000147
NCBI id null
chromosome length 707134
location 582941 ~ 584099 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU406335
NNNNNNNNTTCAGTAAACGGAAGCGTCTGCTCTCATTTCACCATGGGCCTCCTGTTTTAAACCCTTCTCTCCGAGAGATCGGGGTATTTTAATCCTGCCAAAAGCACAGACTGCCCTCTGAGTATCTGAACTGGACTAAACCACTTTAAACCGGCACACAGCGTGTGTGTTAGCAGAGGATATACTGCCCTAGCTTCCCCTCACTCAGTGTTTTTTTAATCACTCCTCCTTAACTGTGTTCGGAATGGAAGACTAGCACACTGCTTACTGCGCAGTATATACTGAATACTGCCTCATATATTTTAAAAATAGTGTGTGAAACAGTGCACTTGCAATGGTAAACGTTTCAAGCTGTAGTGTACTACATTTTTGTCACTATGTTGCATGTGTAATTCAGCAGGTGGCGAGTTACCATCTCTGAAATAAATACGGTTTTGCATGTTTAATCCAATTTTGTGTAAGATGTCCAATCAAAAAATGAGTCAAGAAAAGTGTAGTTCACTGTAAATGAAAGGTTGAATGCATTGCATTGTGACTAATTTGAATTAACAACTAAATTGAGTAGAGCTGAAATTGAGTTTTGCAACATTAATACTGTTATTTTCTTGTTTATTACTGTGAAGCTGCTTGGAAACAATCTGTGTTGTATATAAATAAATGTGCCGCTTAGCTTTAGGAGAATGTCTCATGCCATGCGTACAGAACATTTGCATACTGTATACAGTATACATACTATATACTGCAGAAATAGTGAGATTAGTGTGCTGGTATGCCATTCTGAACACAGCCACAAGGAAACTGTCGCTCAGCATGTTTCTGATTGGTCACTTGAGTCCAGGTTCCTTCCCCTTTAAATGTGATCTGCCTGTTGATTGGTCAGATCCATCGATGTAAGGCCAGCTGTCGTTGAACACTGGGTTTATGAGACGTCTTCCATTAGTGGAGCTGCACCAGCATCTACAAGGGGGTCAAAGGTCAGGGTCCCGTTAGCGGTATGAGAGACTAAAGATGTCTGCCTGATTATTGCCATGCTGAAATGATCTTCTGCTGACCTGAGAAGTTACTTTGTGTTTGCTGATGTTTGCACCTTAAATTCTGAACACGTTCATGTTCATTATGTAAAGAGATCTGAATAAAGCATTAAACCTGCCACAGGAGG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU406335 True 1159 lncRNA 0.40 1 582941 584099

Neighbor

gene id symbol gene type direction distance location
CI01000147_00546348_00552951 NA coding downstream 29990 544167 ~ 552951 (-)
CI01000147_00491199_00512572 DYNC2H1 coding downstream 69726 491199 ~ 513215 (-)
CI01000147_00482393_00489991 DYNC2H1 coding downstream 92950 482393 ~ 489991 (-)
CI01000147_00426318_00471016 DYNC2H1 coding downstream 111925 426318 ~ 471016 (-)
CI01000147_00252331_00335060 GRIA4A, GRIA4 coding downstream 247881 248563 ~ 335060 (-)
CI01000147_00586020_00603643 NA coding upstream 1749 585848 ~ 606212 (-)
CI01000147_00614373_00614621 NA coding upstream 29688 613787 ~ 617189 (-)
CI01000147_00631877_00639420 MB21D2 coding upstream 46485 630584 ~ 639420 (-)
CI01000147_00700597_00701633 NA coding upstream 116027 700126 ~ 702455 (-)
G356368 NA non-coding downstream 162563 419752 ~ 420378 (-)
G356364 NA non-coding downstream 163402 417635 ~ 419539 (-)
G356365 NA non-coding downstream 171001 399775 ~ 411940 (-)
G356348 NA non-coding downstream 238877 343220 ~ 344064 (-)
G356337 NA non-coding downstream 298592 263515 ~ 284349 (-)
G356382 NA non-coding upstream 68588 652687 ~ 656083 (-)
G356423 NA non-coding upstream 85724 669823 ~ 670087 (-)
G356386 NA non-coding upstream 91098 675197 ~ 677479 (-)
G356274 NA other downstream 532042 48047 ~ 50953 (-)
G356249 NA other downstream 543099 14927 ~ 39842 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_008801 NA non-coding NC_007126.7 CM002899.2 45410623 ~ 45414747 (+)