CI01000152_01770267_01784486 (NCAPD2)


Basic Information

Item Value
gene id CI01000152_01770267_01784486
gene name NCAPD2
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000152
NCBI id null
chromosome length 3381324
location 1770091 ~ 1784486 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000152_01770267_01784486.mRNA
ATAAACATTTATATTCACTGCTGGTTGTTTAGGCGTGCAGAGATGTCGTGGGATTTTATGGTGCCGGTTTGTTTGGATGATCTCGTGAAGTCTGGTGCTATTAACCAGTATGTGGTTCAGGATGTGCTGTCTGCCAAACAGCTCCCGTCTCACATCAACAGCTTTAAAGCGGCGCTGAGAAGTCAAGGGCCCCTGTGTATCCTGGAGCATTTTGACACAGCATACAGTGTTTTGCAACATTGTCGCACACTGGATGTGGCGGTAAAAGAAGACATGCTGGAGTTGCTGATACAAGCTGTGGACCGCAAACAGCAGCTCAACGCTGTGAAAATGAGTGTGTTTCTGCTCTGCAAACTCACAGAAATGCTTGAGAGCGACTCATACAGGGAGACTATCGTCACGGCACCCAGCAAGGGTCGTAAGAAGGATAAAGTTGCCGGAAAAGGTCTCCTGCAGTGGGACAGTGAGAGAGAAACAGTTCTTCAATGTTTGACTCAACTGTTGCAGCTGGACATTCGCACTCTGTGGAGTCTGTCTTTAGTTGAGGAGGAGTTTGTCAGCTGTGTGACATGCTGTTGCTATAAACTCCTGGAAAACCCCACCATAAGCCATATGAAGAGCAAGTCCACCAGAGACGCCATCATTCATGTTCTGGGAATCATGGTGAAGAAATACAATCACATGTTGGGAGCATGTGTGAAGGTGATTCAGCTCCTGCAGCACTTTGAGCAGCTGGCGTCAGTGTGTGCGCAAGCTGTGGCTGCCTGGAGCACAGAGTATGGGGTCAAGGCCATCGTTGGAGAGATCATGAGAGAGATTGGTCAAAAGTCGAGTGAGGAACTAGCTAGAGAAGGTTCAGGTGTGAAGGCTTTCTCCAGCTTTCTTTCTGAACTCAGTACTCTGGTACCTGAAACCATGATCCCCAACATCAGTGTTCTCCTGACACACCTGGAGGGAGAGAGTCCGAGTCTGCGAGTGGCTGTGTGTGAGGTTCTCGGGGAGGTTCTGGTCCGGGTTTTGTCTGGTGATAAACTGGATGATTCTGCTCGTGCTGGCCGAGATCGCTTTCTGGACACACTGCAGGAGCACATTCATGATGCCCACTCACATGTCCGAGCACGTGTGCTGCAGGTCTATGCACGTATTGTCAACAGTAAGGCCTTGCCACTATGCAGGTACACTGAAGTTATGGAGCTGACTGTCGGGCGTCTGGGTGATAAGTCTGTCCATGTGTGTAAGAGCGCCATCCAGCTGCTGGCTGCCTTCATTGCTCATAACCCTTACAGCTGCAAGGTACAAACATGCGCAATTAAAACATCTGTTTTCAGCTACAGTCTGAGTCACTATCAATTTGTGTCCAGCTGTAAGATTTTAGCTTTGTTTGTAGTTGCAGTCATCACAGCAGCCGATCTTTGGGACGCAATGAAGCCTGAGGTGGAGATGACCGTGAAAGCACAGCTGGAGCCTGGAAGTGAGGAAGATGATGATAATGAAGAAGAGGAGGAGACTGGGGGAGAGGAGAAAAGAAGCGACAGGGACACTGCTATCCAAATTGCGCAGCTTCTCCGGGAAAGTAAATACAGGAAGGCAGTTGGTCTGTGTATGAGGGCACACTCTCTGTTCCCAGAGTCGTCATTCTTCTCAGGTCTGGCTGACTTGAATGCAGAAACGCTCCTCAACACACTCGCAACACTTTTCAAGGGCCCAGAGCAGGAGACACCTGAGGCCATGACGAGTGAGGCTCCACTCACCCCACAGAAAGAGGGTGAAGGCAATGAAGGGAAAGAGAGTGAACTAAAGAAGCAGGAAATGTTGGTTCAGTACTTGAAAGACACAGAGAGCTTTGCTCTACAAGTGGAAAGAGCCATTGCTGTCATTAACAACATGCTGTACTGGAAAACTACTACAGTTGTGCAGGAAGCTGTGCAGTTCTGTGTCACAGCATTTGAGTTTAGTGTGGCCGACTCCGTGTGTGGAGTCAGAAAGATGCTGCCTCTGGTCTGGTCCACTGATGTTACAATCAAGGACGCTGTCATCCAGGCCTACAGGCGCCTGTACCTCAACCCTCACGGTGAAAACACCAGAGCGAAGGCTCAGACTTTAGTGGACAGTCTGTCAGAGCTGATGGTTGATGCTTCATTAGGGACCATCCAGTGTCTGGAGGAGATTGTCCAGGAGTTTTTCAGCAATGAGAGTGCCCTGCAGACTTCAGTGGTGCAAGTTTTGTGGGAGAGGTTCTCTGGTAAACGAGAGACTAAAACACTTCACAGGAGAGCTGCAGTGCTACTGCTGGGCATGGCAGCACGTGCTGAGCGAGAGGTGGTTCTGAGTAATTTGGACACACTCTGTTCTGTTGCTCTGGGTGAGAAGGTTGCTGAAGATTATCTGCTGGCTCGAGACACACTCATCACCATCGCTAATATAACAGACCATCAATCCAAGGGTGTCCCCTTCAGGCTTCCTATGGACCACCATCTCTTCAGCTGTTTGTCCCAGGCCATTGCTGATGGAGTAGTCCAGTCTGACCCCCATTGGCAGACCTTCATGGAACAGGCTGTCCGTCTCATCTACTTCTTAGCAGAGTCACCTGACCAGCTGTGTTCCCGCCTCCTCCAACGCTCTGCTCGTCTCCTATTGGAGCAAATCACAGAGGGCAGAGAGCCCAACCAGTCACAACTGCAGGAAAGCGAGTCTCAGAGCTCTGAGGGGCAAGTGAATTGTGTGAGCTTGGCCCAGGTGCTGTCACTATGTGGAGCTGTGGCCTTCTGGCAGGCTAATGACAGTTGTGTGGAGGAGGAGCTCGGGCTAGTTGGCGCTTCAGCTGAGGACACTGAGGCGGAGTTTATCCGCAAGATCTGTGAGACTGAGTTATTAGCTGAAGGGAATATGTTGAATGCATTTCTGCCTCTGCTGGTGAAAGTTTGCAGCTCTCCAGGAAAATATTCCCACCCTCAGCTCACCACTGCTGCCTGTCTGGCTCTGTCTCAGTATATGATGATCAGTCCTTCTGTTTGTAAAGACAATATCAGGCTGCTGTTCACTGTGCTGGAGAAATCCCCACTTCCTGTTATCAGAGCCAACACAATTGTTGCTCTTGGTGACCTAACAGTTCGCTTTCCCAACATCCTGGAACCCTGGACACCCAACCTTTATGCCAGGTTGAGTGATGAAAATGCATCTGTGCGTTTGACCGCCATCACGGTTTTGACGCAGCTGGTGCTGAAGGACGTGATGAAGGTCAAAGGTCAGGTCAGTGAGGTTGCAGTGCTCCTGCTGGACCCCGAGCCACACATCGCCAGCCTCGCTCTCAACTTCTTTAACGAGCTCTCTGCAAAGGACAATGCCATTTACAACCTGCTGCCAGACATCATCAGCCGATTATCTGATCCTGAACGTGGAATGAAGGAGGAGGATTTCAACACCATAATGAAACAACTCTTCTCCTACATCACTAAAGAGAGACAGACGGAGAGTTTAGTGGAGAAACTCTGCCAACGATTCAGAACAGCAAAGACGGAGCGTCAATGGGCAGATCTGGCAGTGTCTCTTTCCCTGTTGTCTGTGTGCGAGCGAGGTTTCAAGAAGCTGCAAGAGTGCTGGGACTGTTACAGTGATAAACTCACTGAGCCTGGAGTCTATCAGCCTCTCCTGTCCATTGCGGCCAAACTCCGTAGAAGAGCAAAACAACAGTTTAAGGTTGAAGACTATGAGAAGCGTTTGACGGCTGTTCACACTAAAGGGCTGGAGAATGTGGAGAGTGAGGAACAGCAGACGGGAGACACACAGAGCCAAAACCTACATACGCCACTGCCACCCAAGAGTGTGCGCAAAACCACACGAGGTCGTGGTAAACCGAAGTTGGACGACAGTGACCTTGTAACCCCAAGAAAATCTCGTTCTCGTCCCAAACCTGCCATTACCTTCACCAGTGATGAAGAGGAGGAAGAGGATGCTGTCATGGCTGAGAGTGAGACTCCTAAAGTGACTACACCCATCGCCCGCACACGACGCACTCGTCTCAGACACTGAGCACTCTTTCTGTTGTTGTTGTGGGGGGTTGTTTGTTTGTTTGTTTTTGTTTTGCTTTGCTTTTCAGTCTTGTTTATCTTTTTATCATGTAATCTGATTTTAAACAGATTATGTCTGTGACTGTTGTAATTAAGTGTTTTTAGTTGCCATCAGTATGGTATAATCTTTTTATTAAA

Function

symbol description
ncapd2 Predicted to enable chromatin binding activity and histone binding activity. Acts upstream of or within mitotic sister chromatid segregation. Predicted to be located in chromosome and nucleus. Predicted to be active in condensed chromosome, centromeric region. Is expressed in nervous system; optic cup; pectoral fin; pharyngeal arch 3-7 skeleton; and proliferative region. Human ortholog(s) of this gene implicated in primary autosomal recessive microcephaly. Orthologous to human NCAPD2 (non-SMC condensin I complex subunit D2).

GO:

id name namespace
GO:0000070 mitotic sister chromatid segregation biological_process

KEGG:

id description
K06677 YCS4, CNAP1, CAPD2; condensin complex subunit 1

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000152_01770267_01784486.mRNA True 4205 mRNA 0.49 30 1770091 1784486

Neighbor

gene id symbol gene type direction distance location
CI01000152_01763662_01769747 ACSM3 coding downstream 344 1763289 ~ 1769747 (-)
CI01000152_01755247_01760266 MAP6D1 coding downstream 9416 1755130 ~ 1760675 (-)
CI01000152_01584481_01585153 NA coding downstream 184823 1583831 ~ 1585268 (-)
CI01000152_01567745_01570475 PIH1D3 coding downstream 199616 1567546 ~ 1570475 (-)
CI01000152_01557532_01565618 NA coding downstream 204473 1557225 ~ 1565618 (-)
CI01000152_01892421_01893463 CAMK2N2, CAMK2N1A coding upstream 107649 1890149 ~ 1893866 (-)
CI01000152_01905400_01907934 MUL1A coding upstream 119217 1903703 ~ 1907934 (-)
CI01000152_01917798_01946700 NA coding upstream 132217 1916703 ~ 1948064 (-)
CI01000152_01999033_01999195 NA coding upstream 214297 1998783 ~ 1999195 (-)
CI01000152_02006897_02010593 EIF4E2 coding upstream 221866 2006352 ~ 2010593 (-)
G359289 NA non-coding downstream 80520 1689031 ~ 1689571 (-)
G359281 NA non-coding downstream 97852 1671574 ~ 1672239 (-)
G359280 NA non-coding downstream 99057 1669793 ~ 1671034 (-)
G359277 NA non-coding downstream 106642 1662140 ~ 1663449 (-)
G359255 NA non-coding downstream 113162 1656556 ~ 1656929 (-)
G359315 NA non-coding upstream 98491 1882977 ~ 1883380 (-)
G359318 NA non-coding upstream 99068 1883554 ~ 1883942 (-)
G359429 NA non-coding upstream 168526 1953012 ~ 1954853 (-)
G359372 NA non-coding upstream 261896 2046382 ~ 2059154 (-)
G359178 NA other downstream 426086 1337660 ~ 1344005 (-)
CI01000152_00562189_00571618 CREMA other downstream 1204807 560484 ~ 572648 (-)
CI01000152_02015257_02024292 CAPN10 other upstream 237053 2015257 ~ 2024292 (-)
G359788 NA other upstream 533782 2318268 ~ 2318734 (-)
G359800 NA other upstream 584506 2368992 ~ 2459836 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location