CI01000158_01792648_01806569 (MYO18B)


Basic Information

Item Value
gene id CI01000158_01792648_01806569
gene name MYO18B
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000158
NCBI id null
chromosome length 1938735
location 1792648 ~ 1807235 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000158_01792648_01806569.mRNA
TCTTCCAGTGATATCTCTCAGATCCGAGAGCTTCAGGCTGAAATGGAAGAACTGAAGAAACAGCGACAGACTCTACAGAAGGAGCTGCAGACCAGTGTAGCACGCGTGCAGTTCCTGGAGTCATCCACGGTGGCCCGCAGCATCGTAAGCAAGCAGGAAGCTCGTATCTGTGATCTAGAGAACAAATTGGAGTTCCAGAGAGGACAGGTCAAGAGATTTGAGGTCCTAGTTCTGCGTCTAAGGGACAGTGTGGTGCGGCTAGGTGAGGAGCTGGAGCAGGCGGCCCAGGCCGAGGCCAGAGAGAGGGAGAACTCCCGATACTATCAGCAGAGACTGGCGGATATGAGACTGGAAATGGATGACCTGAGTGTCAGAGAACAGGATAGCAGCCGCCGACGCATGGAGCTGGAAATGCAAGTGGAAGAGCTTAGCGCAGTAAGACAGACCCTGCAAGCTGATCTAGAGACATCAATCCGGCGTATCGTTGATCTACAAGCTGCGCTGGAGGAGGTGGAGTCCAGCGATGAAAGTGATACTGAAAGCGACACCATGTCCAGTGTCGGATCCAGTGTGGGCACCGAAGACGTTGGTGAAGGGATCCGTCATTGGGCGGGTGTGCCACGAGGGGGCCGAGGAGGTGGAACTTCTCCTTACGCAGGAAGCAGCTCTGGCCGTCAATCTGTCACCGACACCATGAGCACCTACAGTTTCAGATCTTGCACGCAAGAACTGGATGAAGATGTCAAAGAAAGTTCTGGAGGTCTTGGCAGAGCATCATCATCCACGGCCCTATCTGAGCTTCTGGAGGGTCTGAGGAAGAAACGTGCTGGCTGGGAAAGAGGCTCTGAGGCGGGCGAGGGCAGCACAGTGTCCCTTCCCATCTATCAGACGACAGGGGCCTCCACCCTACGCCGCAGGGCCTCAGCGCTGTCACTAGAAGCAGAGGAAGGTCTGGAGGACCTGCCTCGACCCGGCATACTGAAACCTCCCAGTCCCCACCTGCCCCGTGCCTCCAGTCTCCGCTCCCTATCGGAGGCAAGCCCAACGTCCTCCACCACCACAACCACAACCACCACAGGAAAGATAAACCGCTTCAGCTCCTGCGACTCCCTCACCTCTGGGACCTCCACCGCAAGTTCACGCCGCCACTTGTCCAACCTCGCCATCCCTGAGGAGGGGGAAGAGGAGCCCAGCTCGAAAGCCATGCCTCCTCTTGGCTCCTATCAACCAATCCGCCGTCGTCTACTTGGTGGCCTGGTGGCCGAAACCGGAGAGTCACAAATAGGAGCAGAACCCCTTGTGTTTCAGAATCGCAGACTTGGGAATCAGGACAAGGAGAGGGCTGGAGTCGATGAAGGGGAAACCAGCTTAGACATTCTTCCAGCAATCCGACGAGCACAGTCCACCAGCAGTCTGGCATCTAGCGGGTCCAGAACGGGCCAGAGACGAGCCCTCAGCGTGCACTTTGGGGAGTTGCCGCCATCCAGAGCATCACGTAGAGAGTCCGACTCAGACTCTTCAAGTTCAGGTGGATCTCAGCAGCGCCGTGGGCCTCAAGGAGAGAGGCTGGAAGCTGAGGGCAGCGAGGATGTCAACTCCGTGATGAAGAAGTACCTCAAAAAAGCAGAGGTCGACTAGAAGACTCAACAAGGTTAAGCTTAAAACTGCACTGGCCTGCTTTACATTTAAGGGGGTCATTTGATGAGGAACCTAATTTTGAGATAGTTTGTACTGAAACATACTGTAACTTTGACTGTAACTCAAAACTTCCTCCCAGATCCAAATCCAGGGATATTCTGAAATTCTTGGTTTGTATAGTCAGTTCCTTTCGTTTAAGTATTCCTCTAGACTAATTTGTTAAAGGATATTACCTGCAGTGTCTGCAGAATTTTCTTTATTGCGAGAATCATGGATTGTTTGGCCTGGATTGCTTTGTGATCCTTTTACAATGTAATGCAGGATATTGCTAATTTCATATGCAAAGCGGATGTTTACATGAGAGTCTTAAAGGCACAGCTGCAAAAAGAAAAAAGAAAAAATTTAGGGTCAAAGAGGGGGTGGAAAATGGTAATGAAAAACATTTTTAGCATTATAAAAAAAGTGCATGACCCCTTTAAATGAAAAACAAAACAAGAAAACAATTATAAATATTTAATTGTGAAAGGATGTAAATCATTTAGTCCTTTTTTTTTTTTTTTTTCTCCTGACAGGATAGATGGTGTGGTGAATCACCCCTGTCCAGAAGGCATTTAACTGGAAGCACAAATACACTGAGGATTTATTTTGAGCACTGTTTGTACACAA

Function

symbol description
myo18b Predicted to enable ATP binding activity; actin binding activity; and cytoskeletal motor activity. Acts upstream of or within sarcomerogenesis. Predicted to be part of myosin complex. Is expressed in musculature system and somite border. Used to study myopathy.

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000158_01792648_01806569.mRNA True 2304 mRNA 0.50 6 1792648 1807235

Neighbor

gene id symbol gene type direction distance location
CI01000158_01776084_01791901 MYO18B coding upstream 747 1776084 ~ 1791901 (+)
CI01000158_01763249_01770168 MYO18B coding upstream 22480 1763249 ~ 1770168 (+)
CI01000158_01691863_01749991 GRK3, ADRBK2 coding upstream 42651 1690577 ~ 1749997 (+)
CI01000158_01687966_01688623 CRYBA4 coding upstream 103976 1687966 ~ 1688784 (+)
CI01000158_01669583_01670236 CLDN5B coding upstream 121556 1669409 ~ 1671092 (+)
CI01000158_01849095_01865697 SEZ6L coding downstream 41860 1849095 ~ 1865697 (+)
CI01000158_01872954_01877521 NA coding downstream 64970 1872205 ~ 1877521 (+)
CI01000158_01881044_01882873 UBB.L, UBC.L, UBB, BRAFLDRAFT_113894, UBC coding downstream 72949 1880184 ~ 1882946 (+)
CI01000158_01886986_01905003 SCARB1 coding downstream 79500 1886735 ~ 1905240 (+)
G363669 NA non-coding upstream 81324 1680007 ~ 1711324 (+)
G363657 NA non-coding upstream 138059 1640154 ~ 1654589 (+)
G363650 NA non-coding upstream 191582 1600832 ~ 1601066 (+)
G363649 NA non-coding upstream 197085 1595114 ~ 1595563 (+)
G363680 NA non-coding downstream 110553 1917788 ~ 1919760 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_003075 CABZ01085662.1 non-coding NC_007121.7 CM002894.2 44242236 ~ 44253104 (-)