CI01000158_01669583_01670236 (CLDN5B)


Basic Information

Item Value
gene id CI01000158_01669583_01670236
gene name CLDN5B
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000158
NCBI id null
chromosome length 1938735
location 1669409 ~ 1671092 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000158_01669583_01670236.mRNA
CTATAACAGCATCCTCCCTGCATACAAGAGCAGAAAACTCCCACTGCATCTCATCCTGCCACACTGCCAAGCGATGTAGAGACACTTCTGCTCAAAACACCTGCTTGAAATTTAACAGGGACCTCACTAGACTTTCTAAACTAAGAGAAGGAGCATCAAAACAACTTTGCAAAGATGATTTCTGCATGTCTGGAGATTATTGGACTTGGCTTGAGCGTCATCGGGACCCTTTTGGTCATGGTGGCTTGCGGTTTGCCCATGTGGAAAGTGACCGCCTTCATCGAGGGCAACATTGTGGTGGCGCAAAGCATCTGGGACGGGCTGTGGATGTCCTGCGTGGTTCAAAGCACGGGTCAGATGCAGTGTAAAATGCATGACTCCGTCCTGGCTCTGACCACTGACCTCCAGACTGCTCGGGCTCTGACGGTCATCTCCGCTGTCTTGGGTGTCCAGGCTCTGATGATAACCATCGCCGGCGCTCAGTGCACCAACTGCATCAGTAAAGAGTCCATCAAAGCCAAAGTAGTCAACGTCGGAGGGGTGATATACATCATGGCAGGCTTGTTTGTGTTGGTGCCTCTGTGCTGGATGGCCAATAACATCATCTCAGACTTCTACGACCCTCAAGTTCCTTATTCAAAGAAGAGAGAGATTGGAGCTGCGCTCTACATCGGATGGGCAGCATCTGCCATGCTTCTGGTCGGAGGAGCACTTCTGTGTTTCTCCCGTCCACAAGATGAAAAATCCTCGTATCCCCTCAAATATGTACCTCCACCTACGAAAAGCACATCAATCAATGGGGACTATGATAAACGAAACTATGTGTGATCACCTCAACCTTTAACCATGGACTATGGCTCTGCGCATATGGACTTTCAAGGCTGTAAAACTGTTTAGTATTTGGTTAGTTCACAAATAACCATAGTTTTTATTCGAAATCCAGATTTAAGGTTAAAATTTATATGAAAATGTATTTGTAGGTGCTCTAACTAGTCTCCATTTCTGACCATGCAATGTGAGAAATGTTTAAGTACAAATATTCCATATTCATTAAAGTTGCATGTCATGATACAAAAAAAAAATTGTTTAAAATCGTTTTAGATTAAATAAAGCATGTAACACTGCAGGACACTGTCAACGTCCCATTTACATGCAACAGGTTTTGTATCAAACTAGATGCAAACATTCAGATAATGAAATGACAGAATGTATTTTCTGTTAACACTGTGTCATGGTAATATTGAATTAGATATACACGGGTATTTTTGTCTTTGTTAATGATATTAGGGTCAGCGGCCCACTTGTTTTCATTTGATTTTAATCACTGTGGTGGGGGGTAGGGGGGATGTGGGTAAAAGGGAGGGTCTATATTTCTTGTTTTTGTTCTGCTTTACGATACAGCACTAATTAGACATGGTCTGTGCTTCAATAAGACACTGAATAATGCCTATTGTTCTGCTTATAGACTCCAGGCTGCAGCTTTTACACAAGACTGTTTTGATCATCTAAACCTCCTGACTGTACATAATTGTATGAAACCGTTTTTCAGTAAATCTGTGCATATTCAAAGTTATAAATAAAAAAAGTTTTTTTTTTTTTTAATAATGTGTCCTGTTACATAATTTTGCTGATACATGAATGATGCATGCTTCATATCCTTGGAGTGTCTGAAGTGTACACTTTA

Function

symbol description
cldn5b Predicted to enable structural molecule activity. Predicted to be involved in bicellular tight junction assembly and cell adhesion. Predicted to be located in cell junction and membrane. Predicted to be integral component of membrane. Predicted to be active in bicellular tight junction and plasma membrane. Is expressed in several structures, including cardiovascular system; eye; integument; pleuroperitoneal region; and ventral mesoderm. Human ortholog(s) of this gene implicated in schizophrenia. Orthologous to human CLDN5 (claudin 5).

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K06087 CLDN; claudin

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000158_01669583_01670236.mRNA True 1684 mRNA 0.42 1 1669409 1671092

Neighbor

gene id symbol gene type direction distance location
CI01000158_01572487_01576220 NR2F1, NR2F2, NR2F1.L, NR2F1A, NR2F1B coding upstream 92696 1571879 ~ 1576713 (+)
CI01000158_01442232_01445146 NA coding upstream 223583 1442187 ~ 1445826 (+)
CI01000158_01394592_01407483 RASA1B, RASA1, RASA1A coding upstream 261220 1393674 ~ 1408189 (+)
CI01000158_01392749_01393057 NA coding upstream 276124 1392749 ~ 1393285 (+)
CI01000158_01309383_01335186 VCAN coding upstream 334009 1309383 ~ 1335400 (+)
CI01000158_01687966_01688623 CRYBA4 coding downstream 16874 1687966 ~ 1688784 (+)
CI01000158_01691863_01749991 GRK3, ADRBK2 coding downstream 19485 1690577 ~ 1749997 (+)
CI01000158_01763249_01770168 MYO18B coding downstream 92157 1763249 ~ 1770168 (+)
CI01000158_01776084_01791901 MYO18B coding downstream 104992 1776084 ~ 1791901 (+)
CI01000158_01792648_01806569 MYO18B coding downstream 121556 1792648 ~ 1807235 (+)
G363657 NA non-coding upstream 14820 1640154 ~ 1654589 (+)
G363650 NA non-coding upstream 68343 1600832 ~ 1601066 (+)
G363649 NA non-coding upstream 73846 1595114 ~ 1595563 (+)
G363631 NA non-coding upstream 149894 1517101 ~ 1519515 (+)
G363598 NA non-coding upstream 179552 1488360 ~ 1489857 (+)
G363669 NA non-coding downstream 8915 1680007 ~ 1711324 (+)
G363680 NA non-coding downstream 246696 1917788 ~ 1919760 (+)

Expression


Co-expression Network