G366508


Basic Information

Item Value
gene id G366508
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000161
NCBI id null
chromosome length 3087367
location 1306263 ~ 1307350 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU418217
AGGGAAGTGAATGACGTCCCGGTCACTAAAGGCCCGAGGTATGCATTTAAGGGTTAACATTGATAATGGCTTCATTTATTGTGTTTGTGTCAGTTGTGTGAGTTATTGTAGTTTTGAAAACTTACTTGGCAAGGACATCCAGCCCCCAGATTCATAAAACCATTTTGTGGTTTTATGTTTGAGATCAGCAGGTTTTAGAGGCTGGTGCGGAGACAGTTTTTCAACACCAGAACTACTGCCTTTTCTGTAGTACAACAGGAAAAGGTTCCTGATGATGATTAACTGCTGTGCTGCTAGTTCCCATTTAATCATACTCATGAAGTTATGAAATTCACAATGAAAGGACAGTTGTGTCAATCAAAATTCAAATTGAAAGTTTGGTTGCAGAATCTGTTTGAGTTGCCTTGATTATAGTCTTTCCTCATTATCATTCCATAAGATCCAGGCACCATGTGGTCTCTGAGCTCTCAGATTGGCTTTGAAGCCCAACACTGGATCCACTAGACCTGCTCTCTGATGTCTCACCGTCTTGGCCCAGCCTTTGCTTACCCAGTAAGCACTCCCGACTGGTGTGCTCTATCTCAGTTGACTCCCCAAGAGAACAGTGAACACCTGATTCTTTTGGAGAGGGTGGAGAATTCTCTGGTAGGAAAGTGGAAGGGTCCACATTCTGGTTCTTACTGAGGGCCACTTCTGGATTCCTGTGCACCTCACCCAGGGTTGGAGTGGAGTAGGAAAACGCTGGTTCTGTGGAAAGGTGAAGGTGTGAATACGAGCTAGGCGTGACCTTGCAGGACAAAGAGGAACCGCCCAAGTTTTGTGAAAAAAATGTATGCAAAACAGGCTGTGATTGGCTGATATTGGCATGAGCTCCAGCACAAACGCCCAGTGATAAGCCCTCTGCTCGGGGGCCTTCTCCAGGTGTTGGCCCCTGGGTTCCTGGGTTGATGCTAAGGAGAGAGGAGCCAGTGGAGAACTGATGGTGGCTGACTGAGGAATGGATGGAGCTCCAGTCATGGGAACAGGGATCATTTGCTGTGACAGGACAGTGTTGATTTGACTCATGCTGGTGAAAGTGTCCCTGTTTC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU418217 True 1088 lncRNA 0.47 1 1306263 1307350

Neighbor

gene id symbol gene type direction distance location
CI01000161_01272798_01288327 NA coding upstream 17365 1272798 ~ 1289008 (+)
CI01000161_01260410_01265135 NA coding upstream 40842 1260410 ~ 1265421 (+)
CI01000161_01236311_01253636 STAT5B, STAT5A, STA5B, STAT5 coding upstream 52317 1236311 ~ 1253946 (+)
CI01000161_01187108_01189802 FOXH1 coding upstream 116398 1185454 ~ 1189865 (+)
CI01000161_01084125_01132855 NA coding upstream 173256 1084125 ~ 1133007 (+)
CI01000161_01387036_01388147 LSM5 coding downstream 79686 1387012 ~ 1388622 (+)
CI01000161_01403705_01410179 EMC9 coding downstream 96355 1403705 ~ 1410370 (+)
CI01000161_01484780_01492989 PELO coding downstream 177430 1484780 ~ 1493080 (+)
CI01000161_01582069_01635520 NA coding downstream 274719 1582069 ~ 1635536 (+)
CI01000161_01695831_01704007 NA coding downstream 388020 1695370 ~ 1704449 (+)
G366507 NA non-coding upstream 3957 1301523 ~ 1302306 (+)
G366392 NA non-coding upstream 15922 1289156 ~ 1290341 (+)
G366494 NA non-coding upstream 44644 1261396 ~ 1261619 (+)
G366492 NA non-coding upstream 77236 1228814 ~ 1229027 (+)
G366491 NA non-coding upstream 78687 1227362 ~ 1227576 (+)
G366509 NA non-coding downstream 167 1307517 ~ 1310682 (+)
G366510 NA non-coding downstream 5873 1313223 ~ 1314232 (+)
G366511 NA non-coding downstream 6955 1314305 ~ 1321878 (+)
G366515 NA non-coding downstream 14810 1322160 ~ 1338259 (+)
G366528 NA non-coding downstream 36009 1343359 ~ 1344274 (+)
G366441 NA other upstream 308041 997902 ~ 998222 (+)

Expression


Co-expression Network