CI01000168_00869412_00895047


Basic Information

Item Value
gene id CI01000168_00869412_00895047
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000168
NCBI id null
chromosome length 1293618
location 869325 ~ 895047 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000168_00869412_00895047.mRNA
GCGGCGTCTTCAGCCCTCAGCAGCTTGGGTCATGTCTACACGGCCATCGGCGACTATCCGAACGCCCTGGCCAGCCACAAGCAGTGCGTCCTGCTGGCCAAACAGTCCAAGGACCAGCTGTCCGAGGCCCGTGAGCTGGGCAACATGGGAGCCGTCTACATCGCCATGGGTGACTTCGACAATGCCGTGCAGTGCCACGAACAGCACCTGAGCATCGCCAAGAGCCTCGGCAACAAGCGCGAGGAGGCGCGCGCATACAGCAACCTGGGTAGCGCTTACCACTATCGGCGTAACTTCGACAAGGCCATGTCCTACCACACGCATGTGCTGGAGCTCGCACAGGAGCTGGAGGAGAAGAGCATCGAGATGAGGGCGTACGCAGGGCTGGGACACGCCGCCCGATGCATGCAGGACTTGGAGAGGGCGAAGCAGTACCATGAGCAGCAGCTCAGCATCGCAGAAGGCCTGAAGGACCGCGCCGCCGAGGGCAGGGCTTCATCCAACCTGGGTTTATTGTTCAGACCTAATGATGTAGGAGAGGTTGCACAGATGAGATGCGCTCGCGGTCTAGTATGGATTGAAACACAAAGTACGCTGCGGCAGTGCAAGAATGCGACAGCACGCCAAAACCACCAGGGATATAGAGGAAACACTGGAATATTCCAAAATAGAGCTTTGAAAATTCCAAAGAATTCCAGACTCCCATTACTCTTAGACATTAAGCAGGGTGTTTATGAACAATCTGTGGCTGGAATCATTCACCAGATGAAAGGGGACTACGAGACTGCTCTGAAGCTGCATAAGGCTCATCTATCCATCGCCCAGGAGCTAAATGACTATGCCGCCCAGGGCAGAGCGTACGGAAACATGGGCAATGCTTACAACGCCCTCGGTGCCTTTGACCAGGCCGTGCGCTACCACCGACAAGAGCTGCAGATTTCCATGGAGGTTAATGATCGCGCCTCGCAGGCCTCGACACACGGAAACCTGGCGGTGGCGTACCAGGCTCTAGGGGCTCACGATCGAGCCTTGCAACATTACCAGAATCATCTGAACATTGCACGAGAGTTGAGGGACATCCAGAGCGAGGCTCGGGCCTTGGGCAACCTGGGTAATTTCCACTGCTCTCGGGGAGAGTTTCCCCAAGCCGTACCTTACTACGAACAGTACCTACGGCTTTCCCCGGACTTGCAGGATATGGAGAGCGAGGGTAAGGTCTGTCACAACTTGGGATATGCGCACTACTGTCTGGGAAACTTCCAGGAGGCGGTGAAGTATTACGAGCAAGACCTGGCACTTGCTAAGGACCTCCACGACAAGCTAAGTCAAGCCAAAGCCTACTGCAATCTGGGCCTGGCCTTTAAGGCTCTTGGCGACTATAGCAAGGCGGAGGAGTGCCAGAAGTACCTTCTTTCCTTGGCGCAGTCGCTAAACAACTCACAGGCTCGATTCCGCGCCTTGGGCAACCTGGGCGACATCTTCCTTTGTAAGAAGGACGTTCCCGGAGCCGTCAAGTTTTACGAGCAGCAGTTGGCATTGGCACATCAGGTCAAGGAACGCAAGATGGAAGCGAACGCCTATGCAGCATTGGGAGCCGCCTACAGGATGCTACAGAAGTTTGACAAGTCCTTAGGGTACCATACCCAGGAACTGGAGGTGTACCAGGAGCTGGGTGACATCCAGGGAGAGTGCCAGGCTCACGGACACCTCGCTGCAGTCTACATGTCTCTTGGGAAGTACACCATGGCCTTCAAATGCTACGAGGAACAGCTTGAACTTGGTCAGCGACTAAAGGACCCCAGCGTTGAGGCCCAGGTCTATGGTAACATGGGCATCACGAAAATGAACATGGGAGTAATGGAAGAGGCCATTGGATACTTCGAGCAACAGTTGGCGATGTTGCAGCAGCTCAGTGGCAACGAGGCCGTGCTGGACCGTGGTCGCGCCTATGGGAACTTGGGAGACTGCTATGACTCGCTGGGAGATTTTGAAGAGGCAATTAAGTATTACGACCAGTATCTCTCTGTGGCACAGAGCCTCAACCATATGCAGGACCAGGAGAAGGCATACAGAGGTCTTGGTAATGGACACAGGGGCCTGTCAAAGCTCAACACTGCGGATTGTGGGGAGAGAACTCACACCGGGCCCGCAATGAGCCAACCTCATCCAAACCCAAACCCCCATCCTTCCCACAGTCCAACGGGAAGGGCGATGGGGAACCTCCAGCAGTCTCTGGTGTGTTTTGAGAAGCGGTTGGTGGTGGCGCATGAGCTGGGAGAGTGCGGAGGAAAAGCTCAGGCCTACGGAGAGCTGGGCAGCTTGCACAGCCAGCTGGGTAACTACGAGCAAGCCATCTCATGCCTGGAACGGCAGCTCGGCATCGCCCGTGACACCCAAGATCGATTGCTGGAGGGTGACGCCAGCTGCGGCCTGGGCGCTGTGTACCAGCTGATGGGCGAACACGACACGGCCCTTCAGTTTCACCAACTGGACCTCCAGATCGCAGAGGAGACGGGCAGCTCCAGCTGTCAGGGCCGGGCCTACGGGAACCTGGGACTCACTTACGAGTCTCTGGGTAATTTCGAGCGTGCCGTGGTGTACCAGGAGCAGCATCTGAGCATCGCGGCACAGACCAACGACCTGGTGGCCAAAACTCTGGCCTACAGCAGTCTGGGACGAACACATCACGCTCTGCAGAACTACTCACAGTCGGTCATGTACCTGCAGGAAGGTAAGAAACGTGAACCATTGGGAGTGAAATTTGACCGTTCTTTGTGAGGTTCACCAGTATAACACTTTCAGATCTCTATTCAGTTGAGGGTGAAACAACTAAAGATATCAGGAAGTTGTTTATTGAGGTATAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000168_00869412_00895047.mRNA True 2865 mRNA 0.55 7 869325 895047

Neighbor

gene id symbol gene type direction distance location
CI01000168_00824417_00835917 TTC28 coding downstream 33408 823728 ~ 835917 (-)
CI01000168_00807511_00815389 PITPNB coding downstream 53936 807472 ~ 815389 (-)
CI01000168_00789765_00794770 MN1A coding downstream 74555 789143 ~ 794770 (-)
CI01000168_00690840_00697335 NA coding downstream 171714 690621 ~ 697611 (-)
CI01000168_00564344_00586248 NA coding downstream 283077 563360 ~ 586248 (-)
CI01000168_00934568_00949104 NA coding upstream 39183 934230 ~ 949104 (-)
CI01000168_00969712_01008179 NA coding upstream 74525 969572 ~ 1009770 (-)
CI01000168_01023228_01030414 NA coding upstream 127358 1022405 ~ 1030913 (-)
CI01000168_01097284_01099844 NA coding upstream 202047 1097094 ~ 1099844 (-)
CI01000168_01110611_01115503 NA coding upstream 214788 1109835 ~ 1115623 (-)
G370968 NA non-coding downstream 98072 770590 ~ 771253 (-)
G370977 NA non-coding downstream 114026 750495 ~ 755299 (-)
G371004 NA non-coding downstream 119123 749980 ~ 750202 (-)
G370976 NA non-coding downstream 119584 746885 ~ 749741 (-)
G371002 NA non-coding downstream 141746 727300 ~ 727579 (-)
G370986 NA non-coding upstream 27206 922253 ~ 929504 (-)
G370981 NA non-coding upstream 120013 1015060 ~ 1020895 (-)
G370979 NA non-coding upstream 147589 1042636 ~ 1043681 (-)
G370950 NA non-coding upstream 267079 1162126 ~ 1167426 (-)
G371046 NA non-coding upstream 366515 1261562 ~ 1281486 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_001835 TTC28 coding NC_007121.7 CM002894.2 3875716 ~ 4039786 (+)