CI01000189_00183881_00277704 (BRE, BRE.L)


Basic Information

Item Value
gene id CI01000189_00183881_00277704
gene name BRE, BRE.L
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000189
NCBI id null
chromosome length 4726117
location 183881 ~ 277704 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000189_00183881_00277704.mRNA
ATGAACAGTCTCTCTCCAGAGGTGGCACTGAGCCGAATTTCTCCTGAGCTGCGGCCTTTACTCTGCACTGTGGTGCGCAATGGACGGGTCGGTTTAGACTCATCTAGCTGTCTCCGGATCACTGACCTCAAGAGTGGCTGCACATCACTAATGCCTGGTCCTTGCTGTGACAGATTTAAACTTCATATTCCATATGCTGGAGAGACTCTCAAATGGGACATCATCTTTAATGCCAGTGACCCAGAACTGCCCCCTGACTTTATCTTCGGAGAAGATGCTGACTTCCTTCCAGAACCATCTGAACTCCCGCACTTGGTGTCGTGGGATGCGGGTAAACCGGAGTGTCTCCTGCAGCTGGTGAAAGAGCTGTTGCAGCAGTACCATCAGTACCAGTGCCAAAGGCTGCGCGACAGTTCCCGCCTGCTCTTCGAGTATGACAGCCTGCTGGAAGACCCTAACTATGGACGCAGTATGGAGATCTACGCCGGCCGCAAGAACAGCTGGACGGGGGAGTTTTCTGCTCGATTCCTTCTCAAACTCCCTGTGGATTTTAGCAACATTCCCATCTATCTTCTCAAGGACACAGCACTGGATCCAGGAGAGGATGTGGCGCTTCTATCTGTAAGCTTTGAAGATGCTGAAGCCACACAGGTCTTTCCAAAACTCTACCTGTCTCCCAGCATTGAGCATGCACTTGGAGGGTCTTCTGCATTACATATCCCAGCATTCCCCAGTGGAGGCTGCCTCATTGACTATGTGCCTCAAGTGTGCCAGTTACTCACAAACAAGGTTCAGTATGTCATTCAAGGATATCACAAGAGGAGAGAATACATTGCTGCCTTTCTCAGTCACTTTGGAATGGGGGTGGTAGAGTATGATGCTGTTGGCTTTACTAAGCTCACTCTTCTGCTTATGTGGAAAGACTTTTGCTTCCTGGTCCATGTGGACCTGCCTTTGTACTTCCCTCGAGATCAACCCACCCTCACGTTTCAGTCTATCTATCACTTCACCAGCAGTGGGCAGCTCTACTCTCAGGTGCAGAAATCTTACCCTTACAGTCCACGCTGGGACGGCAACGAGATGGCCAAACGAGCTAAGGCTTACTTCAAGAGCTTTATCCCTCAGTTCCAGGAGGGGGCTTTTGCCAATGGTAAACTG

Function

symbol description
bre BRCA1-A complex subunit BRE

GO:

id name namespace
GO:0000268 peroxisome targeting sequence binding molecular_function

KEGG:

id description
K12173 BRE, BRCC45; BRCA1-A complex subunit BRE

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000189_00183881_00277704.mRNA True 1158 mRNA 0.50 11 183881 277704

Neighbor

gene id symbol gene type direction distance location
CI01000189_00086672_00092620 SLC4A1AP coding upstream 91261 86511 ~ 92620 (+)
CI01000189_00297654_00300990 FOSL2 coding downstream 19950 297654 ~ 301458 (+)
CI01000189_00322834_00332685 MOCS1 coding downstream 45130 322834 ~ 332750 (+)
CI01000189_00438982_00445216 ASMT2 coding downstream 161278 438982 ~ 445645 (+)
CI01000189_00448469_00457564 JADE1 coding downstream 170765 448469 ~ 458185 (+)
CI01000189_00537167_00546397 NA coding downstream 259463 537167 ~ 547307 (+)
G379470 NA non-coding upstream 32466 146137 ~ 151415 (+)
G379482 NA non-coding upstream 40555 136040 ~ 143326 (+)
G379486 NA non-coding upstream 124420 59169 ~ 59461 (+)
G379481 NA non-coding downstream 5250 282954 ~ 283375 (+)
G379519 NA non-coding downstream 31274 308978 ~ 309182 (+)
G379556 NA non-coding downstream 129819 407523 ~ 407762 (+)
G379557 NA non-coding downstream 130369 408073 ~ 408311 (+)
G379558 NA non-coding downstream 130853 408557 ~ 408761 (+)
G379600 NA other downstream 197911 475615 ~ 496908 (+)
G379799 NA other downstream 734842 1012546 ~ 1012903 (+)
CI01000189_00987665_01058757 PACRG other downstream 738327 987525 ~ 1059385 (+)
G381120 NA other downstream 2561517 2839221 ~ 2841125 (+)
G381491 NA other downstream 3348032 3625736 ~ 3626855 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00004081 bre coding CM030121.1 CM030121.1 32499473 ~ 32529839 (+)