CI01000189_00987665_01058757 (PACRG)


Basic Information

Item Value
gene id CI01000189_00987665_01058757
gene name PACRG
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000189
NCBI id null
chromosome length 4726117
location 987525 ~ 1059385 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000189_00987665_01058757.mRNA
AAATAAATTCACAAGAGCAAGTATATTGTTTGCACATGTTTATTTACATTAATGGCAAAATAACTTAAATAATAAGTGCACAAGTAGCCTGTAGATCTGGAACTTCTTTAAGTCTGTCTAAATATCATTTAGTAATTGCAATGTCTTCTGGTCCATATCCTTTCTTTAGGAAGCTATACTGGCAGAGATCTCAGGATCCAACATTCTGGCCAAAGAGTTGTGTTGGCTCAAGCTGTTTTTCGCCCGCAGCTTTTTCAGTAAACCCGTCAGAGACAAACTCGTCTCCGTCTGCTGGCCACTCACTGAGTTTCCTGACAATACCTGTCAGCTCTCTCCCACCTCTCACAGCCTCATGGCTGCAACTCCAGCCTGTCTGCTCTGGAGCGCTGCCGTTACAAACCGTCACCATCCTAGAGCTCTTCAGCACTGCTGGCATTAGAGCTGATGTGTCTTTGTGCTTGGCACGCTGGGAGAAATGTGCTGCTGGCGCTCACATCAAGCCTTATGTCTCACCTCAATGCCAGAGCGTATCTGGACCGCCGACAGTTAGTTTCAGCTCTGCCTCATCCGTTCCACTGCAGCTATACAAGCTCAAACCGCACCTGCCTGTCTTTCTGCCCAATCTGTCAGGCATTAAGAGCTTTCAACAGCCCTGCTCATGGGCAGATACAGTTTTAATGGCTTCCAAAAGGATCATAATTGCAACCATTCAACAGAAACTCTTTCAATGCCCTCAACACGAGGAACAGGCAGGTCATCTGCACCACGTTGAAGGTTCTGCAGCACCTGGTTGTATCAGCAGACATGTTTTATTTGTGTCTCTTTGTCATCTGATGTCTGCCATTCTTTCAAATATGGTTCTGCAGACTGGCGTGAGCATTCATTGTGTCCTGGTGTCAAACCAGTTCATGGTTCCGTTCACCGCCTTTGTCAGGCAGACTATAGGCCTGCCAGACATCTTCAGACCAAAAGAAGGAGCACTGGAGGAACAGAAAAAAGCTTCTCTCATTAGCTCCAGGCTCCATGCTAATCTCCTCTGTGAATTACCAGTAGAAAACTCCGGTGACGGTATTGACTACAGTCAGCAGAAGAGGGAGAACATTGGAGACCTGATCCAGGAAACGCTTGAGGTGTTTGAACGCTATGGGGGCGAGGATGCCTTCATTAACATCAAATACATGGTGCCCACCTACGAGTCCTGCCTCCTCAACTAAAAAGAGCGGAGAACTCACTCGCAAACACACACACAGACATACACATTCTTATTCAAACATGTAAACACACACACCTTATGTTACATTCCTAATTTCTGACTCTATTGAAGACATAATGCAGATGAAATGAGTCTATGCGACACGGCTGTTTGTATTGGAGAAAACACTCATACACACACAGAGCTTCCTGTGAAGATGAACAGACACAAGGAGCACAAGGGTCA
>TU434037
GTTGTAACAAATGGCAAAATTTTTCACACATTGTCAAAATATTCATGGCCTCAAAGTGTTTTTGGACTTTTCTCTCTCTGTCTCTACATCTGTCTGTGTTTGTCTACAGATGCCCTCAACACGAGGAACAGGCAGGTCATCTGCACCACGTTGAAGGTTCTGCAGCACCTGGTTGTATCAGCAGACATGGTGGGTGAGGCGCTGGTCCCGTACTACAGACAGATCCTCCCCATCTTAAACATCTTCAAGAACATGAACAAAAACTCCGGTGACGGTATTGACTACAGTCAGCAGAAGAGGGAGAACATTGGAGACCTGATCCAGGAAACGCTTGAGGTGTTTGAACGCTATGGGGGCGAGGATGCCTTCATTAACATCAAATACATGGTGCCCACCTACGAGTCCTGCCTCCTCAACTAAAAAGAGCGGAGAACTCACTCGCAAACACACACACAGACATACACATTCTTATTCAAACATGTAAACACACACACCTTATGTTACATTCCTAATTTCTGACTCTATTGAAGACATAATGCAGATGAAATGAGTCTATGCGACACGGCTGTTTGTATTGGAGAAAACACTCATACACACACAGAGCTTCCTGTGAAGATGAACAGACACAAGGAGCACAAGGGTCAATAAATCTCTCAGTGGCAACTAACCTGAATTTAATTTTCATTCTGTAGAGAATTAAACAAGGAGAAATGTAGAAAATGTATGCACATCCAATACAAGCTGGCCACAGGTACAGGAAACAAGGCAACAAAATTGAAGTTAATTTACCTCATGATGGTCTAGATGAGTCTTGGAGAATTAATATTAGTATGAGAATAATTTATTTTTGCTTAATTATTTACTTAAATTTGACTTAAATCAGTCTTCTTAAATTATTTAAAAAACATATGATGCTCAAAAAGAAGAAAAAAATATGTATTGAAAAAAAAATCAATACATATACTGTATATACATATGTGTGTGTGTGTATATATATATATATATATTAGTATTAGTATTATAATTAATATTATTGTTATAATCTTTT

Function

symbol description
pacrg Predicted to enable Hsp70 protein binding activity; Hsp90 protein binding activity; and chaperone binding activity. Acts upstream of or within determination of left/right symmetry. Predicted to be active in cytosol; neuron projection; and vesicle. Is expressed in several structures, including Kupffer's vesicle; axis; forerunner cell group; nervous system; and pronephros. Orthologous to human PACRG (parkin coregulated).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000189_00987665_01058757.mRNA False 1438 mRNA 0.46 8 987525 1058981
TU434037 True 1048 TUCP 0.37 2 1016031 1059385

Neighbor

gene id symbol gene type direction distance location
CI01000189_00968023_00981490 PACRG coding upstream 5711 968023 ~ 981814 (+)
CI01000189_00893376_00898271 CTSL.1 coding upstream 89123 893376 ~ 898402 (+)
CI01000189_00877464_00886363 VGLL2B coding upstream 100610 877464 ~ 886915 (+)
CI01000189_00693840_00694391 TRNP1 coding upstream 291558 693701 ~ 695967 (+)
CI01000189_00671005_00685458 RPS6KA1, RPS6KA2 coding upstream 301254 671005 ~ 686271 (+)
CI01000189_01068817_01136608 QKI, QKIA coding downstream 9836 1068817 ~ 1136608 (+)
CI01000189_01149997_01208771 NA coding downstream 89861 1148842 ~ 1209039 (+)
CI01000189_01310217_01313204 LUZP1 coding downstream 250098 1309079 ~ 1313849 (+)
CI01000189_01347522_01351375 NA coding downstream 288541 1347522 ~ 1352267 (+)
CI01000189_01566029_01667788 MDGA2, MAMDC1 coding downstream 507048 1566029 ~ 1667788 (+)
G379780 NA non-coding upstream 10915 975065 ~ 976610 (+)
G379700 NA non-coding upstream 135458 842387 ~ 852067 (+)
G379695 NA non-coding upstream 192016 795189 ~ 795509 (+)
G379570 NA non-coding upstream 223422 760546 ~ 764103 (+)
G379582 NA non-coding upstream 370047 616592 ~ 617478 (+)
G379660 NA non-coding downstream 37604 1096585 ~ 1107177 (+)
G379825 NA non-coding downstream 157795 1216776 ~ 1217132 (+)
G379863 NA non-coding downstream 277784 1336765 ~ 1337311 (+)
G379856 NA non-coding downstream 284828 1343809 ~ 1344797 (+)
G380398 NA non-coding downstream 411203 1470184 ~ 1470390 (+)
G379600 NA other upstream 490617 475615 ~ 496908 (+)
G381120 NA other downstream 1780240 2839221 ~ 2841125 (+)
G381491 NA other downstream 2566755 3625736 ~ 3626855 (+)
G381655 NA other downstream 3061406 4120387 ~ 4122344 (+)
G379786 NA non-coding upstream 20922 994849 ~ 995109 (+)
G379799 NA other upstream 3128 1012546 ~ 1012903 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location