G379786


Basic Information

Item Value
gene id G379786
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000189
NCBI id null
chromosome length 4726117
location 994849 ~ 995109 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU434202
GTCAATTCAATGAGAATTACATCCACACCACAACTATAATGATACAGAGGAACGATATCATTGGAATTACTTTAAAAAAATCTGCCATTTTGTCCGACAAAGGAGTCAGGGGAATTAGCAGATTAACGTAGGTGGACTTGAACTTTAAAAATCAACGTCTTTCCGTGATTTGAAACAACATTCCTTGTTGAACCTTGATGTTCATTCATGTTTATTTGAACTAGTAGGAAGAGACGATCAGTTCACGAGCCGCTTGAACTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU434202 True 261 lncRNA 0.37 1 994849 995109

Neighbor

gene id symbol gene type direction distance location
CI01000189_00968023_00981490 PACRG coding upstream 13035 968023 ~ 981814 (+)
CI01000189_00893376_00898271 CTSL.1 coding upstream 96447 893376 ~ 898402 (+)
CI01000189_00877464_00886363 VGLL2B coding upstream 107934 877464 ~ 886915 (+)
CI01000189_00693840_00694391 TRNP1 coding upstream 298882 693701 ~ 695967 (+)
CI01000189_00671005_00685458 RPS6KA1, RPS6KA2 coding upstream 308578 671005 ~ 686271 (+)
CI01000189_01068817_01136608 QKI, QKIA coding downstream 73708 1068817 ~ 1136608 (+)
CI01000189_01149997_01208771 NA coding downstream 153733 1148842 ~ 1209039 (+)
CI01000189_01310217_01313204 LUZP1 coding downstream 313970 1309079 ~ 1313849 (+)
CI01000189_01347522_01351375 NA coding downstream 352413 1347522 ~ 1352267 (+)
CI01000189_01566029_01667788 MDGA2, MAMDC1 coding downstream 570920 1566029 ~ 1667788 (+)
G379780 NA non-coding upstream 18239 975065 ~ 976610 (+)
G379700 NA non-coding upstream 142782 842387 ~ 852067 (+)
G379695 NA non-coding upstream 199340 795189 ~ 795509 (+)
G379570 NA non-coding upstream 230746 760546 ~ 764103 (+)
G379582 NA non-coding upstream 377371 616592 ~ 617478 (+)
G379660 NA non-coding downstream 101476 1096585 ~ 1107177 (+)
G379825 NA non-coding downstream 221667 1216776 ~ 1217132 (+)
G379863 NA non-coding downstream 341656 1336765 ~ 1337311 (+)
G379856 NA non-coding downstream 348700 1343809 ~ 1344797 (+)
G380398 NA non-coding downstream 475075 1470184 ~ 1470390 (+)
G379600 NA other upstream 497941 475615 ~ 496908 (+)
G379799 NA other downstream 17437 1012546 ~ 1012903 (+)
CI01000189_00987665_01058757 PACRG other downstream 20922 987525 ~ 1059385 (+)
G381120 NA other downstream 1844112 2839221 ~ 2841125 (+)
G381491 NA other downstream 2630627 3625736 ~ 3626855 (+)
G381655 NA other downstream 3125278 4120387 ~ 4122344 (+)

Expression


Co-expression Network