CI01000189_00877464_00886363 (VGLL2B)


Basic Information

Item Value
gene id CI01000189_00877464_00886363
gene name VGLL2B
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000189
NCBI id null
chromosome length 4726117
location 877464 ~ 886915 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000189_00877464_00886363.mRNA
TGGTCGACTGTTCCGTTGCCTGCGAGCCAAGAGGAGCGAGCGGGTTATCATGAGTTGTCTGGATGTTATGTACCCGGCTTATGGTCATTACGCACCGTACGCGCACAAAGCTTCAGCGTTCATCAGCACTTTACCGGCACCCCTTGGTCTGAGAAGCCCCTCGTCTCGCTGCAGGGATCCGATGGACAGCGTGGGGGTCCCGTGCTGCTCAGAAGGCGTCCCGGTTTCTGCCGGAAGCTCCAGCTCAGGGGGTCCGTCCCCATCACCATATCCTTCGGCCGGACAGGTAGAGGAGGCTACGAAGGACAAAGAGGTCGGGGAGGCAGAATACCTGAGCTCACGATGCATCCTCTTCACCTACTACCAAGGGGACATTAGTAGCGTGGTGGACGAACACTTCTCCAGAGCTCTCAGCACCTACATGGAGGCCGAGGGCAAAAAGAGGCACAGCGATCCCAGCACAGATACTATGTTTATACGCAGCAGTAAGCGCAGTGGCTCGAGCTCATATCGCGTTCAAACAGCTCACAATACCGAGCGTCAGATTTATGAGGAGCTCGCCCACCCCTCCTCTGATCACGACTACATCACCGGTGTCTTTTTTCAGAGGAATTCTAAATATAAAAAAGCTTCATCCTCAAGCAGTCGACGCAGTTTCCCTCCATCTTTCTGGGACAGCAACTACCCATCTCCGCCCAGTCGACCCCACTGTGATCCTGCAGGTGCTCCCACTTACGCAATGGACCCCTACGCCCAGGCCTTGCACCCCGGTCTGCCTCACTCACACGCTCACCCGCACCCATCAGAGTCCTGGAGCTACTCTCAAAGCCAGCCTTATCCCCCCCCACGGCCCCTCCACGAACTGTACTCCTCTCCTGGGCTTGATGCCCACTATGGACCTCTTCTGATGCCTGCCGTCCGGCCGCCTCATCTCCCAACGCTGCCTGGGCATTATGAAGTGGGAAAGCTGGAACCCACTGCAACATGGCCAGGGCTGCTTCCGCCTGGGGAAGTGGCACAGAGTCTGGCTCTCAATATGGAACCAGTTCGGAAAATGAAGCTTTCATGTGTGCTACACAGCTTCATTTTCCAATTAAGGAATTACTGCAATGCAATTACTGATCAAGTTTCCAGAATGTTCCGTTCAGAAAGCCATTGTGTTCATGTCTGCTTCGCACCGCAGGTCTCCAGCACCACAAGAAAGGGAAGGAGCTCTACTGGTTTTAATGAGAAGCCCTTCATCGACCATCCAATTAAAGCCTGCAGTTTGGCCCATTGTACCCGAACTGTTGTTTCTTTAGCCCCCACGCACACCGGCTCTCCACCAGCTCTGCACACGCTCTGAACACGCTCCAGGACTATTTGTGTGCACCATGGAGATATGAACATAGGGTGATGAGAGAGCGCCTGGGGGAGGCAGGGGCGCTAGACGACATGGTCTTTCTGTTTTTGATCTTTTTTTCTCTTTTTGATCTTTTTTAAATTAATTTATTGCGGTGTAAAAATCCAGCTTGCCCTCTACGATTCTCTGTTTGGACGTTGAGACGTAAGAAACATCGCATGGTGCAGTGAATGATACATTTCCTAAAAATCTGGCTGTTTATATTGATTGAAAAAGGATGGCAATGTGTTTGTATTGTTTCTTTGCATTATTTTTTTCTTCTCATGTACAGTATTTTTATTTATATATATACATATATATATATATATGTATATATATATATATATATATATATATATATATATATATACATACATATATATACATATATATATATATATATATATATATATACATACAATAGTATTTATGTGTTCCAATTAAAATACACTCACGGCCAGTGCTGTTAATTTTTTCTTTTTCTTAGGAAACGTAACATGGTGTGAAACAGTTACA

Function

symbol description
vgll2b Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be active in nucleus. Is expressed in several structures, including forebrain; muscle; notochord; segmental plate; and trunk. Orthologous to human VGLL2 (vestigial like family member 2).

NR:

description
unnamed protein product, partial

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000189_00877464_00886363.mRNA True 1897 mRNA 0.48 6 877464 886915

Neighbor

gene id symbol gene type direction distance location
CI01000189_00693840_00694391 TRNP1 coding upstream 181497 693701 ~ 695967 (+)
CI01000189_00671005_00685458 RPS6KA1, RPS6KA2 coding upstream 191193 671005 ~ 686271 (+)
CI01000189_00613239_00646678 NA coding upstream 230516 611599 ~ 646948 (+)
CI01000189_00552262_00553370 NA coding upstream 323978 550833 ~ 553486 (+)
CI01000189_00537167_00546397 NA coding upstream 330157 537167 ~ 547307 (+)
CI01000189_00893376_00898271 CTSL.1 coding downstream 6461 893376 ~ 898402 (+)
CI01000189_00968023_00981490 PACRG coding downstream 81108 968023 ~ 981814 (+)
CI01000189_00987665_01058757 PACRG coding downstream 100610 987525 ~ 1059385 (+)
CI01000189_01068817_01136608 QKI, QKIA coding downstream 181902 1068817 ~ 1136608 (+)
CI01000189_01149997_01208771 NA coding downstream 261927 1148842 ~ 1209039 (+)
G379700 NA non-coding upstream 25397 842387 ~ 852067 (+)
G379695 NA non-coding upstream 81955 795189 ~ 795509 (+)
G379570 NA non-coding upstream 113361 760546 ~ 764103 (+)
G379582 NA non-coding upstream 259986 616592 ~ 617478 (+)
G379627 NA non-coding upstream 298145 578385 ~ 579319 (+)
G379780 NA non-coding downstream 88150 975065 ~ 976610 (+)
G379786 NA non-coding downstream 107934 994849 ~ 995109 (+)
G379660 NA non-coding downstream 209670 1096585 ~ 1107177 (+)
G379825 NA non-coding downstream 329861 1216776 ~ 1217132 (+)
G379863 NA non-coding downstream 449850 1336765 ~ 1337311 (+)
G379600 NA other upstream 380556 475615 ~ 496908 (+)
G379799 NA other downstream 125631 1012546 ~ 1012903 (+)
G381120 NA other downstream 1952306 2839221 ~ 2841125 (+)
G381491 NA other downstream 2738821 3625736 ~ 3626855 (+)
G381655 NA other downstream 3233472 4120387 ~ 4122344 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_011501 vgll2b coding NC_007128.7 CM002901.2 27434626 ~ 27447527 (+)