CI01000189_00510737_00516326 (NIPAL3)


Basic Information

Item Value
gene id CI01000189_00510737_00516326
gene name NIPAL3
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000189
NCBI id null
chromosome length 4726117
location 509758 ~ 516335 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000189_00510737_00516326.mRNA
AGCGTGAGGATGGCACGAGAGGACAGTGTGACGGAAGACTCTTACACCGAAAACCTCATTGGTACATTGTTAGCTATCTTTGGGAACCTGTTAGTCAGCATCGCAGTTAGCATTCAGAAACAAAGTCATGTGACATTGGCGGGAAATAAAGACCCGAGGCAATACTACTACACTAAGACCTGGTGGTCTGGCCTGGTGCTGATGGTTCTGGGGGAGGGCGCCCTGTTTGTGTCTTACGCATTTGCTCCGCTCTCTCTCATAGCTCCACTTAATGCTGTGTCTGTCATAACGAGCTCCATCTTAGGTTTCCTGTTTTTGCGGGAAAAGTGGAAGGCACAGGAATTCTTGAAGCGCTACATCTTGACTTTCCTGGGCTGTGTCTTGACGGCGGGCGGCACGTACCTCTTTGTGACGTTTGGGCCGAACTCCCATGAAAAGCTGAATGCGGAGAACATAGTAAAACATGTTATTGGCTGGCCCGTCCTCTTATACTTGCTTCTGGGGATCATCACATTCTGTCTAGTGCTGTATTTCTACAAACGTCGGAATGCAAACTACATTGTCTTGATTTTGCTACTGGTGGCACTACTTGGTTCGGTGACTGTAATCACAGTGAAGGCGGTTTCGGGGATGATTGTGCTTAGCATCTTGGGTCCTCTACAGCTGTCGTATCCCATATTCTACGTCATGCTTGTCTGCATGGTGGCCTCTGTCGTCTTTCAAGCATCATTTTTAGCACAGGCATCTCATCTGTATGATTCCTGTCTAATTGCCTGTGTGAATTACATTTTCTCCACAACATTTGCAATTGTGTCAGGAGCCATATTTTATCAGGAGTTTAACCATGAAGATGTTCTGCACATATGCATGTTTCTGTTGGGATGCTCTATGTGCTTTCTTGGAGTGTTCCTGATCACTAAAAGCAAGAGGAAGGTCAAAGCCTTTGAGCCATATGTTACTATGGACATGGCAAAAGGTATTCCAACCATTCACAACAAAGGCTGGGCTGTGCAGCCTGACTATAACGGCTCGTTTTCCTACGGAGCACTGCAGAACAATGACAGTGTGGGTCCTGTAACACTCCCAGTGAACCAAGAGCTGTCAGCCTCTCCCAGTCCTGTTAGCCCGTACCAATCATCAGAGCTGAAGAAAGACTGAACGGAAATGTGCCTGAAGTGCTATTAAGACTGATTTCAGAATACAGTTCTAGAATATTGGACCATTCTAGAACTTCTGTTTTCTCTCATCTCATCCTAAGCCAGGAAAGCAAGCTAGACCACATGCTAGAATTCAAATAAGGACTTTCATTGGTGGTGTTGATTTTATCTTGAGAAATATTGGCATGTTATCTTTGTATGATACTCATATCTGTAATCATGCTTTAAATGTGCTGACTGACATTCTGATCACTCCCGGTCTCTTATCAAAGCTCATATTACTAACCTAAATATACCTCATAAGATGTTTTGGATTCTACTACTGCTTTGTACCAGCGGTACTGCAGCTGGTCCAGCTTTATTAGCCAAAGACTAATGTAGATTGCACAATTCCCAGCTATATACAAATATATGTTTGCTACTGGCTTAATATCCTGTATGCACCAGCTCATACGTGTCTCATTTTCCATTTTCGGGCCTAAAGCTGTGCGGTGCCTATTATTTATTCCCTGTGCCTGTCCGAAGCATACAAAATAGACTTTCTGTACAAATCTGCATGTTTATAGGTAATACATTGAATATCAGAACACTGTTGGTGTTTGCAATGTACTGTACAGATGCATTCTGTAAAACTTTAAGAAACACTGGTGGATATTTTGTCATAAATACCATTGCTTAGTGCTTTTATGTGGTAAAATATGTTATTGTTGTTTTGGTTGTGTGGCTCTTTTTTAACATTTAACACAAGTAATCATTAATGCTGTATTGATTAAACCATTGGCTGACTTTTTATTGAACGATAATGGGAAATCTGACTGTCACATAAGCCACATCAATACACTGAGTTATGTTTAAGTGCAATTACTACTGTGTTGAGATCATGTAAATTTAATGTTCATTTTTTTTTTATTTTTAACCTAATGTTTATACTCTTACAACCATTCCACAATGACAATCATAATGTCTTTAACCACAATAAA

Function

symbol description
nipal3 Predicted to enable magnesium ion transmembrane transporter activity. Predicted to be involved in magnesium ion transport. Predicted to be integral component of membrane. Predicted to be active in membrane. Orthologous to human NIPAL3 (NIPA like domain containing 3).

GO:

id name namespace
GO:0015693 magnesium ion transport biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000189_00510737_00516326.mRNA True 2137 mRNA 0.41 11 509758 516335

Neighbor

gene id symbol gene type direction distance location
CI01000189_00506407_00508897 NA coding downstream 861 506355 ~ 508897 (-)
CI01000189_00496400_00496746 NA coding downstream 12410 495915 ~ 497348 (-)
CI01000189_00477967_00490706 RCAN3 coding downstream 18948 477673 ~ 492947 (-)
CI01000189_00461716_00469154 NA coding downstream 40460 461011 ~ 469298 (-)
CI01000189_00340265_00391583 DAAM2 coding downstream 118175 340265 ~ 391583 (-)
CI01000189_00527327_00527614 NA coding upstream 9945 526280 ~ 527662 (-)
CI01000189_00557254_00592764 CNKSR1 coding upstream 40868 557203 ~ 592764 (-)
CI01000189_00703680_00736690 NA coding upstream 186927 703262 ~ 736690 (-)
CI01000189_00744231_00759517 NA coding upstream 227768 744103 ~ 759517 (-)
CI01000189_00764790_00765233 ID3 coding upstream 248339 764674 ~ 765776 (-)
G379943 NA non-coding downstream 206339 291768 ~ 303419 (-)
G379907 NA non-coding downstream 462555 46880 ~ 47203 (-)
G380066 NA non-coding upstream 80785 597120 ~ 597442 (-)
G380070 NA non-coding upstream 87184 603519 ~ 603731 (-)
G380071 NA non-coding upstream 88886 605221 ~ 605571 (-)
G380097 NA non-coding upstream 128953 645288 ~ 646111 (-)
G379933 NA non-coding upstream 162104 678439 ~ 679609 (-)
G380177 NA other upstream 377885 894220 ~ 898517 (-)
CI01000189_02961166_02963382 NA other upstream 2442773 2960570 ~ 2963454 (-)
G381317 NA other upstream 2482538 2998873 ~ 3006444 (-)
G382060 NA other upstream 3314292 3830627 ~ 3832613 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_012150 nipal3 coding NC_007128.7 CM002901.2 26928418 ~ 26935339 (-)