CI01000189_01342802_01344801 (KDM1A)


Basic Information

Item Value
gene id CI01000189_01342802_01344801
gene name KDM1A
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000189
NCBI id null
chromosome length 4726117
location 1342792 ~ 1344801 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000189_01342802_01344801.mRNA
GAGAGGCCTCTGTCACCTGTGATGCTGTCCAGTAAGAAGTCAGACCCAGGCTCCTCTTCCTCAGGGAGTAACGGCGGTGACCGTGCTCCTGAAACCCTCTCTGCCCCTCAAGCTGGTCCGGCCGGTCCCTCTGGCCCGGGTTTAGTAGATGTGAAAAAGAAAGAGAGAGCCTCCCCAAGTGGGGAACCAGGTGGACCCCCTCTCTCACACCCTCCTGGGCCAGGAGGGATTGATCAGGACTCTGCAGAGGGGCGCAGAACCAGTCGCCGCAAAAGGGCCAAGGTGGAGTACAGGGAGATGGACGAGAGTCTCGCTAATCTGTCGGAGGATGAGTATTACTCAGAGGAAGAGAGGAACGCTAAAGCTGAGAAAGAACGAAAACAGGTGGTTCCTCCACCAGCCCCACCAATAGAGGAGGAGAATGACAGCGAGCCTGAGGAACCATCAGGTGTAGAGGGGGCTGCCTTCCAGAGCCGTCTCCCACATGACCGTATGACATCACAGGAAGCTGCATGCTTCCCTGACATTATCAGTGGACCACAGCACACTCAGAAGGTGTTCTTATACATCCGGAACCGCACACTTCAGCTATGGTTGGACAACCCCAAAATTCAGCTGACTTTTGAGGCCACTGTGCAACAGCTAGAAGCTCCATACAACAGTAAGTCTGTTCCACCTGACATTGCTCTGATTCCAAAAATCCTCTCTCAGAGGATTTGATGTTATTACA

Function

symbol description
kdm1a Predicted to enable chromatin binding activity; flavin adenine dinucleotide binding activity; and histone demethylase activity (H3-dimethyl-K4 specific). Acts upstream of or within nervous system development; regulation of hemopoiesis; and regulation of retinoic acid biosynthetic process. Predicted to be located in nucleus. Is expressed in brain; head; intestine; and spinal cord. Orthologous to human KDM1A (lysine demethylase 1A).

GO:

id name namespace
GO:0050660 flavin adenine dinucleotide binding molecular_function

KEGG:

id description
K11450 KDM1A, AOF2, LSD1; [histone H3]-N6,N6-dimethyl-L-lysine4 FAD-dependent demethylase

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000189_01342802_01344801.mRNA True 730 mRNA 0.54 4 1342792 1344801

Neighbor

gene id symbol gene type direction distance location
CI01000189_01321624_01323067 NA coding downstream 19404 1321447 ~ 1323388 (-)
CI01000189_01289557_01297885 NA coding downstream 44880 1289270 ~ 1297912 (-)
CI01000189_01256704_01259709 NA coding downstream 82897 1256656 ~ 1259895 (-)
CI01000189_00859327_00862617 YTHDF2 coding downstream 480175 858786 ~ 862617 (-)
CI01000189_00831218_00832634 NA coding downstream 507706 831001 ~ 835086 (-)
CI01000189_01391124_01392266 HTR1D coding upstream 45841 1390642 ~ 1393944 (-)
CI01000189_01692825_01697453 NA coding upstream 347709 1692510 ~ 1697552 (-)
CI01000189_01765011_01768780 AP4S1 coding upstream 420161 1764962 ~ 1769294 (-)
CI01000189_01794806_01800713 COCH coding upstream 449157 1793958 ~ 1800713 (-)
CI01000189_01810663_01815039 NA coding upstream 465862 1810663 ~ 1815039 (-)
G380281 NA non-coding downstream 156764 1185797 ~ 1186028 (-)
G380279 NA non-coding downstream 164259 1178245 ~ 1178533 (-)
G380277 NA non-coding downstream 165326 1177212 ~ 1177466 (-)
G380276 NA non-coding downstream 168176 1174364 ~ 1174616 (-)
G380270 NA non-coding downstream 182838 1159694 ~ 1159954 (-)
G380301 NA non-coding upstream 6405 1351206 ~ 1375762 (-)
G380348 NA non-coding upstream 41037 1385838 ~ 1386302 (-)
G380450 NA non-coding upstream 124817 1469618 ~ 1469891 (-)
G380546 NA non-coding upstream 337349 1682150 ~ 1682392 (-)
G380551 NA non-coding upstream 361260 1706061 ~ 1706286 (-)
G380177 NA other downstream 444352 894220 ~ 898517 (-)
CI01000189_00764790_00765233 ID3 other downstream 577415 764674 ~ 765776 (-)
CI01000189_02961166_02963382 NA other upstream 1614307 2960570 ~ 2963454 (-)
G381317 NA other upstream 1654072 2998873 ~ 3006444 (-)
G382060 NA other upstream 2485826 3830627 ~ 3832613 (-)
G382052 NA other upstream 2540761 3885562 ~ 3892909 (-)
G382153 NA other upstream 2800789 4145590 ~ 4146084 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location