CI01000189_02823407_02846026 (ITSN2, ITSN2B)


Basic Information

Item Value
gene id CI01000189_02823407_02846026
gene name ITSN2, ITSN2B
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000189
NCBI id null
chromosome length 4726117
location 2823407 ~ 2846026 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000189_02823407_02846026.mRNA
GCGGTCGGAGTATTTGGGCTATAACCCCAGAGGAGAGGGACAAACATGATCAGAAGTTTGATACCCTCTCGCCAGTACAGGGCTTTGTTACAGGGCTTCCTCAGTCTGTGCTAGCTGAGATATGGACCCTGGCTGATATGAATAAAGATGGTAGAATGGACCGGCTGGAGTTTTCTATAGCCATGAAGCTGATCAAGATGAAACTGCAGGGACAGAATCTTCCTACAGCTCTGCCTATCATCATGAAGCAGCCACCTGTGCCAGCTCCAACCATGCCAGCAACACCTCTCGGAATGGGAACTATGCCAAATGTACCCATGATGCCCAACATGCCCATTCTGACCCCTATACCAATGACCACCATGAGCCCTATGCCGGGCATGACTCCCATGATGGGCACAGGTCTGTCGGTGCCAGTGATTCCCAACATCAGCACTCCAGCCCTGCCTAATGGACCTATTGCCATTCTACATCCAACCCCCATCCCTCTCACCTCCACTCTCCCGCTGTCAAGTTCCTTTTCCTCTTCTCCACTGGGCTTCTCCGCCACTCCAATGAACAAGACCTCATCTTTGCTGGACCTGGGCTCGAGCAGCTCAAACTCCTCCCCCTCCACATCGTTGGCCAGCAACTCTCCTAAGGGCGGCCCCTCTGATTGGGCCGTCCCACAGGCATCACGGCTCAAATACAGGCAGCAGTTTAACAGCCTGGATAAACAAATGATCGGTTATTTAACAGGTCCTCAAGTAAGAACTGTAATGGCTACAACATTGCTTACTCAGACCCAGCTAGCTGCCATCTGGAATCTGGCTGATGTGGATAAGGATGGCAAACTGAAGGCCGATGAGTTTATTCTTGCCATGCATTTGGTAGATATGGCTAAAATGGGACAGCCACTGCCTATGGCACTTTCTACAGACTTGGCAGCTAAGAAGGAGCTGGAGCGCCAACGGCAGATTGAGTGGGAGAGAAGGAGAAAGCAAGAGCTCCAAAACCAGAAGAGTGAGGAGCAGGAGGAGATCATCAAGCTCCGAGCCAAGAAGAGAAGTCTCGAGATGGAGCTGGAGGCTGTGGAATTTAAGAGAAAGTTGGGACAGTCGTCCACAGAACAGCAAAAACTCAACGACAGACTCCACAGCCTGAGTCTTAACAATCTGCCTACGGCAACAGTGAAGACTTTACAGAGGAATATGGAAGAGAAGGATCTTACCTGTCGAAAGCTTAAAGAACAGCTTAATGTTGTGGAGAAGGAGACTGCAGCAAAATTAGCAGACATGGATCAGTATAAGAAAGAAATCCAGGATCTCAGAGAGAGCCAGAGGATGCAAGAGTCTGCTTTGGAAAAACTTCGCAACATTAAGGAAGAAAAAATTCGAGAACTAAAGAAACGCAAGCAGGAGGAACTGGAAAAAAAGAGGAGAGAAGAGGAAGAGCAAAAACGCATCAAACTGGAGAAGGAGCGGCAGTGGCAGGAGAAACTGCGTCGTGATGAGGAGGAGAAACAGAGGAGAATGCAGGAGGAGAGAGAGGCCAAACTTCCTGCAAGGCTGAGAGTCGAAGAACAGAACAAGAAGACCACTGTCAAATCAGACATTGTTGCTGCTCTTCTGCGTGGCCTGGAAGAGAGGAAGGGCAGCAAACATCCTCTTGGCACACAGCACAGAAGATCAGCAGCATTGACGACGTTTAAAGCCCTCTACCCTTTCACTGCTAGAAACGATGATGAGCTCTCCTTCGAAAGCGATGACCTGATTGAGGTGGATGAGAGCGTAGAGCGAGAGCAGGGCTGGCTGTACGGCAGTCGGCAAGGGAAGATGGGCTGGTTCCCTGAGAGCTATGTGGAGAAGCAGGCCAAATCCGAGGCTCCACTCGTGGCCAAACAAGCCCTGAAGCCACAGGTCTCCATTTCTGTCAGCAAACTGAGTGACGGACAGAGTGGATCACGGCTGAACTCCGCTTTCACCCCCACCCATGCCACAGGCTCTGCCTCTTCCAGCCATGGTCAGGTGGTGGGGAATGTGCAAGCTCAGGCTCTGTGCTCTTGGACTGCAAAGACGGACAACCATCTCAACTTCTCCAAAGATGATGTGATCACAGTTCTGGAGCAGCAGGAGAACTGGTGGCTGGGAGAGCTCAGTGGGGTTAAGGGGTGGTTCCCCAAAACCTATGTTACAGTGCTGAGCGCCAGTGATACACAAGCAGATTCTTCTGATGCTTCCGATACGGCAGATGGATCCAACTATGAAGAATACGTGGCGCTGTACACTTACGAGAGCCCTGAGCCTGGAGACCTGACCTTCACTGAGGGAGACACCATCCTGGTATCCGAGAGAGAAGGGGAGTGGTGGAGAGGCAGCATCGGAGACAGATCAGGAGTCTTCCCCTCTAATTACGTCAAGCCAAAGGAGACTGATACATCAAGTCTCTCTGGAAAACTTGGAATGCCAGGGAAGAAACCAGAAGTGGCCCAGGTGACCACTGCACACACTGCAGCAGGTGCAGAGCAGTTAAATCTCGCTCCAGGCCAACTCATCCTCATTCTCACCAAGAACTCCTCCGGCTGGTGGCTCGGGGAACTGCAGGCCAGGGGGAAGAAGCGTCAGAAGGGCTGGTTCCCTGCTTCGCATGTCAAGCTCCTGGGCTCAAACAGCGGCAAATCTACACCTGCATCTGCGGCTGTCGGCCAAGTCACTGCCATATACGACTACACCGCAGCGAACGAGGACGAGCTGAGCTTCTCGAAGAGTCAAATTATCAATGTGCTGGACAAAAGCAATCCTGACTGGTGGAAAGGAGAACTCAATGGGGTCACAGGCTTGATTCCTACCAACTATGTGAAAGTGGCCACCTCAGATTCTGACCCCAGTCAGCAGTTAAATGAGCAGATTTACAAAGCACAGCTCAAGAAAATGAGCGATCATTCAGGGGGTAAACTGCTATTTTTGCGGCTATGGGATGTGGATGATGAAGACTCCATGGATGGTCAAACGGACAGACCATCAGCAGGGTGTGCTGACCAGACCACTTTGGATTTAATGAGCCCGCAGGAGAAGAAACGACAAGATTACATTCATGAGCTCATTCAAACTGAGGAGAAATACATGGAAGACCTACAGCTGGTCCTAGAGGTCTTCCACAAGCCCATGTCTGAATCAGGCCGTCTCACTGAGGCTGAAATGAACATGATATTTGTCAACTGGAGGGAGCTTATCCAGTGCAGCTCCAAGATGCACAAGGCCCTGAAGGCAAGGAAAAAAATGGGAGGAGACAACATGCCTGTTCACATGATCGGGGACACCATGGCCTCTGAGCTGTCACACATGCAGGCCTATATCCGCTTCTGCAGCTGCCAGCTGAATGGTGCCACGCTGCTGCAACAGAGAACTGATCAGGAGCCAGACTTCAAAACTTTCCTTAAGAAAATTGCAACAGACTACCGTTGTAAAGGAATGCCTTTGTCCAGCTTTTTACTCAAACCTATGCAAAGGATCACCCGCTACCCTCTCCATATTAAAAATATCTTGGAATATACTCCAGAGAGTCATGTGGACTATGTGCAGTTGCTAGAGGCTTTGGAGAAGGCAGAGCTGCTGTGCTCTCAGGTGAACGAGGGCGTAAGGGAGAAGGAGAACTCAGAAAGGCTGGAGTGGATCCAATCCCATGTGCAGTGTGAAGGCATCACAGAGAATCTGACCTTCAACTCTCTAACCAACTGCCTGGGTCCTCGTAAATTGCTACACAGCGGGAAGGTGTTTAAGACCAAAAGCAATAAGGAGTTATATGCCTTTTTGTTCAACGACTTTCTGCTGTTTACTCAAGCTGTCAGGCAGTTCACTTCTTCAGGAACAGACAGGCTCTTCAACCCTAAATCCAACACCCAGTACAAGATGTATAAGACGCCTGTGTTCCTAAATGAAGTTCTGGTGAAGCTTCCGTCAGATCCGTCCAGTGATGAGCCCATCTTCCACATTTCCCACATAGATCGCGTGTACACACTGAAGACCGAGAACATTAACGAGAGGACTGCATGGGTTCAGAAGATCAAAACTGCATCAGAAGAATTCCTTGAGATGGAGAAGAAAAAACGGGAAAAAGCCTATCAGTCTCGATCAATGAAGGCAAGTGGAATTGGTCGACTGCTTGTCACCATTTTGGAGGCAACGGAGCTAAAATCCTCCAAACCAAATGACTTCTTAGGTCGCACTGAAGTTCCTGTAGCCACTATTAAGAAAGAGCTTGAGAATAAAGGTCCGTCCACCAGGAGGCTGCTGCTTCATGAAGTTCCCACTGGAGAGGTCTGTCCAGAGCAAACACATATGTTTATAGACTCATTCAAACACGTGAATGTAACGAGGCAGAGAGGACTCAACTTCAAGAACAAGCTCTACACCTGCGTGCGTGCTGACAATCACTCGATATACGCTAAATGT

Function

symbol description
itsn2b Predicted to enable molecular adaptor activity. Predicted to be involved in clathrin-dependent synaptic vesicle endocytosis. Predicted to be active in several cellular components, including clathrin-coated pit; intracellular vesicle; and presynaptic membrane. Orthologous to human ITSN2 (intersectin 2).
itsn2 Predicted to enable molecular adaptor activity. Involved in positive regulation of dendrite extension. Located in extracellular exosome. Part of centrosome.

GO:      GO:0005089, GO:0005737, GO:0006897, GO:0070062, GO:0005813, GO:0030154, GO:0005509, GO:0005515, GO:0035023, GO:1903861, GO:0046872

KEGG:

id description
K20045 ITSN; intersectin

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000189_02823407_02846026.mRNA True 4430 mRNA 0.50 36 2823407 2846026

Neighbor

gene id symbol gene type direction distance location
CI01000189_02686987_02689446 NA coding downstream 133772 2686041 ~ 2689635 (-)
CI01000189_02663877_02665709 NA coding downstream 157617 2663089 ~ 2665790 (-)
CI01000189_02469062_02471153 NA coding downstream 352254 2468614 ~ 2471153 (-)
CI01000189_02450025_02461432 NA coding downstream 361908 2449828 ~ 2461499 (-)
CI01000189_02404459_02433659 ESRRG, ESRRGA coding downstream 389748 2404459 ~ 2433659 (-)
CI01000189_02924018_02946613 SH3YL1 coding upstream 77275 2923301 ~ 2946613 (-)
CI01000189_02961166_02963382 NA coding upstream 114544 2960570 ~ 2963454 (-)
CI01000189_02986636_02986941 NA coding upstream 140522 2986548 ~ 2986941 (-)
CI01000189_03097932_03102218 GDF7 coding upstream 251656 3097682 ~ 3102815 (-)
CI01000189_03114741_03118058 YY1A coding upstream 267925 3113951 ~ 3118058 (-)
G381253 NA non-coding downstream 1449 2821669 ~ 2821958 (-)
G381223 NA non-coding downstream 2641 2804007 ~ 2820766 (-)
G381245 NA non-coding downstream 29058 2793032 ~ 2794349 (-)
G381243 NA non-coding downstream 34663 2787880 ~ 2788744 (-)
G381239 NA non-coding downstream 37182 2785788 ~ 2786225 (-)
G381886 NA non-coding upstream 242339 3088365 ~ 3088554 (-)
G381901 NA non-coding upstream 243599 3089625 ~ 3090056 (-)
G381887 NA non-coding upstream 244774 3090800 ~ 3092313 (-)
G381902 NA non-coding upstream 247111 3093137 ~ 3093435 (-)
G381914 NA non-coding upstream 395255 3241281 ~ 3241515 (-)
G380177 NA other downstream 1924967 894220 ~ 898517 (-)
CI01000189_00764790_00765233 ID3 other downstream 2058030 764674 ~ 765776 (-)
G381317 NA other upstream 152847 2998873 ~ 3006444 (-)
G382060 NA other upstream 984601 3830627 ~ 3832613 (-)
G382052 NA other upstream 1039536 3885562 ~ 3892909 (-)
G382153 NA other upstream 1299564 4145590 ~ 4146084 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_012192 itsn2b coding NC_007128.7 CM002901.2 30473507 ~ 30521043 (-)