XLOC_012192 (itsn2b)


Basic Information

Item Value
gene id XLOC_012192
gene name itsn2b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 30473507 ~ 30521043 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00024015
GTCAGCCATGTTGTTTGTCTGACAGCGCCGTACAGCAACAGGTTGTCAAAGATTCTTTATATAACATTGCGGAAATCATTTAAAGAAACCCCTACGGCCGATGCTCTTTCATTTAATTCCGAGGGCCATGGAAAAGGATACGTTTTCTTCCCAGGAGATCTCGCCAAGTCAGTAATGCTGTTGTGTAATATGACTGAGCTAGCCAGCTGAGACGAGGAGATCAGGACCGCTCTCCTCATATCCCTGCCACCTGCAGCCATGAATGGTGGTCGGAGTATTTGGGCTATAACCCCAGAGGAGAGGGACAAACATGATCAAAAGTTTGACAGCCTCTTGCCAGCTCAGGGCTATGTTACAGgggaGAAGGCACGGAACTTCTTTATTCAGTCAGGGCTTCCTCAGCCTGTGCTAGCTGCAATCTGGGCCCTGGCTGATATGAATAAAGATGGTAAGATGGACCGGCTGGAGTTTTCTATAGCCATGAAGCTTATCAAGATGAAACTTCAGGGGCAGAATCTTCCCACAGCTTTGCCCATCATCATGAAGCAGCCACCAGTGCCAGCTCCAACTATGCCAGCAGCACCTCTCGGAATGGGAGCTATGCCAAATGTACCCATGATGCCCAATGTGCCCATTCTGACCCCCATACCTATAGCGACCATGAGCCCTATTCCAGTCATGACTCCCATGATGGGCACAGGACTGCCAGTGTCAATGATGCCCACCATCAGCTCTCAAACCCTGCCTAATGGACCTATTGCCATTCTACAGCCGTCCCCCATGCCTCTCACTTCCACTCTTCCACTGTCAAGTTCCTTTTCTGCTTCTCCGTTGGGTTTCTCCACCACTTCCATGAACAAAACATCGTCTTTGCTGGACCTAGGGTCGAGCAGCTCAAACTCCTCCCCCTCCACATCATTGGCCAGTAATTCACCTAAAGGCGGACCCTCTGATTGGGGCGTTCCACAGGCATCACGGCTCAAATACAGGCAACAGTTTAACAGCCTGGACAAACTAATGAGCGGTTATCTAACAGGTCCTCAAGTGAGAACTGCAATGGCTACAACATTGCTAACTCAAACACAGCTCGCTGCTATCTGGAATCTAGCTGATGTTGATAAGGATGGTAAACTGAAGGCTGATGAGTTTATTCTTGCCATGCATCTGGTAGACATGGCTAAAATGGGACAGCCGCTGCCTTTGGCACTCCCTTCAGATCTGGTGCCCCCATCATTGAGGGGGAAGCTAGGCGAGTCTATGAATGGAACCACTCCCTCGATCTACGCAGGGCTGGCTGAGGACCTCTGTGAGCCTGAGCCTCCACAGAAATCAAGGAACAATTTGACTTTTGAGGATAAGTTCAAGAAAAACATGGAGCTTGGAAATGCAGAGCTGGAGAAGCGCCGACAGGTCCTGCAGGAGCAGCAGCGCAGGGAGGAGGAGAGGAGAGCACAGAAGGCCAGAGAGGAGCAGGAGCGGAGAGAAAGAGAAGCACGAGAGCTGGAGCTGAAGAGGAAGAGGGAAGAAGAGATCCGACTGGAGCGACAGAGGGAgctggagagacagagagaggaggAGAGACTCAAAGAGCTGGAGAGGAAGGAGGCAGCCAAGAAGGAGCTTGAACGCCAGCAACAGCTTGAGTGGGAGAGGAGAAGAAAGCAGGAGCTCCAGAACCAGAAGAGCGAGGAACAGGAGGACATCATCAAGCTCCGAGCCAAGAAGAGGAGTCTGGAGATGGAGCTGGAGGCTGTGgGCAACAAGCAGAAGCAAATCTCTGACAAGCTCAGAGATGCTCAAGGCAGAAAGAGAATTCATAAAAATGAGCTGGAAATGATCAACCAGAAAAGAGACTCCTGCATCACTGAAATCAGCTCTCTGCAGAAGCAGTTAGAGgaTTTTAAGAGAAAATTGGGACAGTCAACTTCTGAACAGCAGAAACTCACTGACAAACTCCGCAGTTTGAGTCTAAACAGCGTTCCTACTGCAACGGTGAAGACTTTGCAGAACAATATGGAGGAGAAGGATCTTTCCTGTCGAAAGCTTAAAGAGCAACTTAACGCAGTAGAAAAAGAGACGGCGGCAAAATTGGCAGACATGGATCAGTATAAGAAAGACATTCAGGATCTCCGTGAGAGCCAGAGGATGCAAGAGTCTGCTTTGGAAAAACTGCGCACCATCAAGGAAGAAAAAATACGAGAGCTTAAGAAGCGAAAGCAGGAAGAACttgaaaagaaaagaagagaagagGAAGAACAGAAACGCATCAAACTAGAAAAGGAGCGACAGTGGCAGGAGAAACTTCGTCGCGACGAAGAGGAGAAACAAAGGAAAATTCAGGAGGAACGAGATGCCAAACTTCGTGAggaggaagagagagaaagacaagCTCGCTTACAGGCTGCTAAAGAACAAGCAGAACGAGAGCGCAAGGCCCGTGAAGAAGAGGAGAGGAGGCGTagggaggaggaggaagaacggAGAGAACAAGAGAGACGCAGACTGGAGGAGGAGGACCGCAGGCGGAGAGATGAAGAGAGGAGGAAGCTGGAGGAAGAAAGGAGGAAACTGGAGGAAGAAAGGAGAAAGCTGGAGGATGAGAGAAAAAGACAGGAGGAGATAAGATTGAAggaagagagggagagggaggagCGCAGGAGagcagaggaggagaggaggaggaAAGAGGAAGAGAGACGAGAAGAGGAGAGGAAGAGAGAGCGTGAGGAGGAGGAAAGGAGACGTCATCGAGCACAGGAAGCGGCTATGAGGGATGCGGAGGAGAGGAAGAGGATCGAGGAGGAGAGGAAGAGAAAAGAGGAAGAGCGGAGAAAGCAGGAAGAGGAGGACAGGAGGCGGAGGGAGGAGGAGCAAAGGAAACAGGATGAGGAGAGGAAAAGGAAACAGCAGCAGGAAGAGGCAGCAGCCGCCAGATTGAGGGATGATGAACAGAATAAGAAGAACACTGTTAAATCAGACCTCGTTTCTGCTCTTCTGCGCGGCCTGGAGGAGAGGAAAGGCGGCAGACGTCCTCTCGGCACGCAGCACAGGAGATCAGCTGCACTGACCACGTTTAAAGCTCTTTACCCCTTCACTGCCAGAAATGAGGAAGAGCTCTCCTTTGAATCAGATGATCTGATCGAGgtgGATGAGAGCGTAGAGCGTGAGCAGGGCTGGCTATATGGCAGTTGGCAAGGGAAGATGGGCTGGTTCCCTGAGAGCTATGTGGAGAAGCAGACCAAGTCTGAGGCTCCGGTCGTGGCTAAACAAGCCCTAAAACCCCAGGTCTCCATCTCTGTCAGTTCCACTGATGCATCTGATACAACTGATGGATCCAACTATGAAGAATACGTCGCTCTTTACACTTATGAGAGTCCTGAGCCTGGAGACCTGACCTTCAATGAGGGCGACACTATCCTGGTctcagagagagagggagaatggTGGAGGGGAAGCATCGGAGACCGAGCAGGACTCTTCCCGTCCAATTACGTCAAGCCAAAGGAGACCGATACATCAAGTCTCTCTGGCAAATCTGGAACGCCTGGCAAGAAACCTGAAGTGGCTCAGGTTACTACTGCATGCACAGCTGCAGGTGCAGAACAGCTAAATCTCTCCCCTGGTCAACTCATTCTTATCCTCAACAAAAACCCCTCCGGCTGGTGGCTCGGGGAACTGCAgGCCAGGGGGAAGAAACGTCAGAAGGGCTGGTTCCCTGCTTCACATGTCAAGCTCCTGGGATCAAACAGCGGCAAATCCACACCTGCAACGCCATCAGTTGGCCAAGTCATCGCTATTTACGACTACACCGCAGCGAACGAGGACGAGCTGAGCTTCTCGAAGAGTCAAGTCATCAACGTTCTGGACAAAAGCAATCCTGACTGGTGGAAAGGAGAGCTCAATGGGGTCACAGGCTTGATTCCTACCAACTATGTGAAATTGACCACAGATTCTGACCCCAGTCAGCAGTGGTGTGCTGACCAGAGCACTCTGGAATCAATGAGCCCAAAGGACCGGAAACGGCAAGATTACATCCATGAGCTCATTGACACAGAGGAGAAATACGTAGAAGACCTACAGCTGGTCCTAGAGGTCTTCTACAAGCCCATGTCTGAATCAAATCGTCTCTCTGAGGCTGAAATGAACATGATATTTGCCAACTGGAGAGAGCTTATTCAGTGCAGCTCCAAGATGCTTAAGGCCCTGAAGGCAAGGAAAAAGAGCGGAGGAGACAACATGCCAGTTCACATGATTGGCGATATCCTGACATCCGAGCTGTCAAACATGCAGGCCTACATCCGCTTCTGCAGCTGCCAGTTGGAGGGTGCTGCGCTGCTACAACAGAGAACTGATCAGGAGCCAGACTTCAAAACCTTCCTCAAGaaaattgctACAGACTACCGTTGTAAAGGAATGCCTTTGTCCAGCTTTTTACTCAAACCTATGCAAAGGATCACCCGCTACCCTCTTCATATTAAacatATTTTAGAAAACACTCCAGAGAGCCATGTTGACTACATTCAGCTGACTGAGGCTTTGGAGAAGGCTGAGCTGCTGTGCTTTGAGGTGAATGAGGGTGTCAGGGAGAAGGAGAACTCAGACCGGTTGGAGTGGATTCAATCCCATGTGCAGTGTGAAGGCATTGCCGAGAATCTGATCTTCAACTCCATGACCAACTGCCTGGGTCCTCGTAAACTGCTGCACAGTGGAAAGGTCTTTAAGATGAAGAGCAATAAAGAGTTACACGCTTTTCTGTTCAGCGACTTTCTGCTGTTCACCCAAGCTGTCAGACAGTTCACTTCTTCAGGAACAGACAAACTCTTCAGTCCGAAGTCCAACACGCAGTACAAGATGTACAAGACTCCTGTCTTTCTGAATGAAGTTTTAGTGAAGCTTCCATCAGACCCATCCAGCGACGAGCCTGTCTTTCACATTTCCCATATAGACCGTGTCTACACATTGAAGACCGAGAACATTAACGAGAGGACTGCATGGGTTCAGAAGATCAAAGTAGCATCAGAAGGTTTCATTGAGACTGAGAAGAAGAAACACGAAAAGGCATATCAGTctCGATCAATGAAGGGAAGTGGCATTGGTCGCCTGCTTGTCACCATCTTAGAAGCAACTGAGCTAAAATCCTCCAAACCAAATGgaaAGAGTAATCCATACTGTGAAGTGACCATGGGCTCTCAGTGTTACACTTCCCGAACCATCAATGACACCGTCAACCCCAAGTGGAACTTCAACTGTCAGTTTCACATTAAAGACCTGTATCAAGATGTCCTCTGCATTACGATTAACGAGAAAGAGCTGTTTTCACCAGATGCCTTCTTAGGTCGCACTGAGGTTCCTGTAGCCACTATTAAGAAAGAGCTTGAGAATAAAGGTCCGTCCACAAGGAGGCTGCTGCTTCATGAAGTGCCCACGGGAGAGGTTTGGGTTCGGCTTGACCTGCAGCTGTTTGACCACAAAACTCCCAAATGATGATGGAGGATGTCTCTTCAAAGCTGCTCTTCAAGCACAGTGTCTCACCACTAACTCTCAACATCTTCAAGACTGACCTTTGCCTTACAATGTCCTACTAATGAGGAACATACtaatgaatgtgtttgtgttcaCAACTTTGCCAAGTTATGTTTCTTGATCAAGCAACATGGGAACGAAAAGGGAGAATTAGGGATTTTTAGTTTTATTGcctaaaaaataatttttccaCTGGATGTAGAGATATTCTCAGGACCTATATTTTGCTTCAAATATACTGTCTTTTATTAATGTACTTAAAGCTATATTTGTTATACTCGTAATTTGCCTAGATCTGAAGTTGATGAGAACCCTTTTTTTGAACTTGAATATTTTCATCAGTAACACTAAACCAGGTGGTGTTGTTTTAATTCATTATCTGTCTGCCTTAACTGCCAGTTCTTCCATTAAAATTCACCCTAACAGAATTAATTTGCACCAGTCAGTGGATCCTCCGTAAAACCTAATAACATTCTGTTATATGTAACGTGGAAGGAACTTATTTTTGCAAAGCTTACTAGTTTTATTTACTAAGGTACAAATGAGGTGATTAACCAGGGATTATTGGTTACAGGTCTAATCACTGTTGATTTTGTTTGCTTGACtgagttttatttatgttaatttatgcGTCTTGGACTATCTGCACATTTTACGCTGCCCAATATATCTGCAATGCCTTTAAGCATTCAGGTAAGGTCctaatattgtatatttttgctGAGTTGGATAGTCTGAGCAGTGACGCAAGTcacagttgttgtttttgaagGTTTTactcattttagttttaaatgtaataaattttggATTATTCTTATTTTTCCTTGCTCTACTCTTGCTACTTAGTCCTTGATTTTTAGCCAAGTATTTGTTTTGGAGAAAGATGGTTTAATGTTGTTTGGTAAGCCAAGCACAAATATGCAACAAGCATCAGGTTTCAcatgcaaataaatacatttaaaacgt

Function

symbol description
itsn2b Predicted to enable molecular adaptor activity. Predicted to be involved in clathrin-dependent synaptic vesicle endocytosis. Predicted to be active in several cellular components, including clathrin-coated pit; intracellular vesicle; and presynaptic membrane. Orthologous to human ITSN2 (intersectin 2).

GO:

id name namespace
GO:0006897 endocytosis biological_process
GO:0016197 endosomal transport biological_process
GO:0150007 clathrin-dependent synaptic vesicle endocytosis biological_process
GO:0042734 presynaptic membrane cellular_component
GO:0005886 plasma membrane cellular_component
GO:0097708 intracellular vesicle cellular_component
GO:0005905 clathrin-coated pit cellular_component
GO:0005737 cytoplasm cellular_component
GO:0060090 molecular adaptor activity molecular_function
GO:0005085 guanyl-nucleotide exchange factor activity molecular_function
GO:0005509 calcium ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050309-102 Predicted to enable molecular adaptor activity. Predicted to be involved in clathrin-dependent synaptic vesicle endocytosis. Predicted to be active in several cellular components, including clathrin-coated pit; intracellular vesicle; and presynaptic membrane. Orthologous to human ITSN2 (intersectin 2).

Ensembl:

ensembl_id ENSDARG00000054973

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00024015 True 6492 mRNA 0.47 37 30473507 30521043

Neighbor

gene id symbol gene type direction distance location
XLOC_012191 si:ch211-175f11.5 coding downstream 133 30469744 ~ 30473374 (-)
XLOC_012190 NA coding downstream 63748 30398949 ~ 30409759 (-)
XLOC_012189 NA coding downstream 103982 30306215 ~ 30369525 (-)
XLOC_012188 NA coding downstream 192794 30278131 ~ 30280713 (-)
XLOC_012187 si:dkey-27l15.1 coding downstream 247983 30140099 ~ 30225524 (-)
XLOC_012193 NA coding upstream 52529 30573572 ~ 30593058 (-)
XLOC_012194 sh3yl1 coding upstream 83776 30604819 ~ 30652738 (-)
XLOC_012195 alkal2b coding upstream 140305 30661348 ~ 30666037 (-)
XLOC_012196 zgc:194392 coding upstream 179584 30700627 ~ 30702411 (-)
XLOC_012197 gdf7 coding upstream 314033 30835076 ~ 30839338 (-)
XLOC_012186 NA non-coding downstream 390794 30077331 ~ 30082713 (-)
XLOC_012185 CR377229.1 non-coding downstream 419350 29976009 ~ 30054157 (-)
XLOC_012201 BX571712.1 non-coding upstream 575283 31096326 ~ 31097541 (-)
XLOC_012203 BX571712.2 non-coding upstream 660907 31181950 ~ 31185243 (-)
XLOC_012208 BX539317.1 non-coding upstream 863391 31384434 ~ 31384548 (-)
XLOC_012218 NA non-coding upstream 1606854 32127897 ~ 32136128 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000189_02823407_02846026 ITSN2, ITSN2B coding CI01000189 null 2823407 ~ 2846026 (-)
bowfin (Amia calva) AMCG00003389 LOC108441044 coding CM030121.1 CM030121.1 62457 ~ 77508 (-)