AMCG00003389 (LOC108441044)


Basic Information

Item Value
gene id AMCG00003389
gene name LOC108441044
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 62457 ~ 77508 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003389
GTTTTTCATAAGCCCATGATGGAGTCTGGTCaccttacagagacagagatatcATTAATCTTTGTGAACTGGAAGGAACTCATAACATCGAATACTAAGCTCCTAAAgGCAATGCGAGTGCGCAAGAAGACAGGTGGGGAGAAAATGCCGGTTCAAATGATAGGAGACATCCTGGCATCTGAGTTGTCCCACATGCAGGCTTACATCCGGTTTTGCAGTTGCCAGCTTAATGGAGCATCTCTTCTCCTGCAGAAGACTGACCAGGAGCCTGAAGTCAAGGAATTTCTCaagAAAATTGCCACTGACCATCGGTGTAAAGGCATGCCTCTCTCCAGTTATCTGCTGAAGCCCATGCAGCGAATCACCCGCTATCcactaattattaaaaatAGTACTCCAGAAACTAACCCAGACTATAGCCACCTGCGGGAGGCCTTGGAGAAGGCAGAGGAACTGTGCTCTCAGGTCAATGAAGGTGTTCGAGAGAAGGAGAATTCGGACCGCCTCGAGTGGATACAGGCGCATGTGCAGTGTGAGGGGGTGACTGAGCATTTGATTTTCAACTCCCTTACAAACTGCCTGGGGCCTCGCAAGCTTCTTTACAGTGGGAAGGTATACAAAACAAAGAGTAACAAGGAGCTCTACGGATTCCTCTTCAGTGATTTCCTTCTCCTCACCTACATGGTCAAACAGTTTGCATCATCTGGGTCAGACAAACTTTTCAATCCAAAATCCAacacacagtttaaaatgtataaaacaccAGTGTTTCTAAATGAAGTGCTTGTGAAGCTTCCTTCTGATCCCTCCAGTGATGAACCGGTGTTTCATATATCTCACATTGATAGAGTTTACAATCTGAGGACTGAGAACATCAATGAAAGGACGGCCTGGGTCCAGAAAATTAAAGCAGCATCAGAACATTTCATTgaaacagaaaagaagaaacgGGAGAAAGCTTATCAAGCACGCTCTCTTAAAGCCAGTGGCATAGGCAGATTGCTGGTAACCATCCTTGAAGCCACCGAGTTGAAATCATCCAAGTCAAATGGAAAGAGTAATCCATACTGTGAAGTGACAATGGGGCCACAGTGTTTTAATACAAGGACATTAAATGACACATCAAATCCTAAATGGAACTTTAACTGcaatttttttataaaggaCATTTATCAGGATGTGCTATGCATAACTGTCTATGAAAGAGACCAGTTTTCTCCAGATGAGCTGGAAAACAAGGGAGCAGCAACCAGGCGTCTTCTGTTGCACGAGGTGCCAACAGGCGAAGTGTGGATCCGCTTAGACTTGCAACTCTATGACCAGAAAACCTGA

Function

NR:

description
PREDICTED: intersectin-2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003389 True 1332 mRNA 0.44 10 62457 77508

Neighbor

gene id symbol gene type direction distance location
AMCG00003390 NA coding upstream 155113 232621 ~ 240513 (-)
AMCG00003391 gpr63,LOC106571327,LOC106607724 coding upstream 461286 538794 ~ 539741 (-)
AMCG00003392 NA coding upstream 516767 594275 ~ 597178 (-)
AMCG00003393 NA coding upstream 542058 619566 ~ 627690 (-)
AMCG00003394 NA coding upstream 583020 660528 ~ 664276 (-)
G89 NA non-coding upstream 408076 485584 ~ 485900 (-)
G103 NA non-coding upstream 441593 519101 ~ 558734 (-)
G112 NA non-coding upstream 536683 614191 ~ 616320 (-)
G122 NA non-coding upstream 657258 734766 ~ 769986 (-)
G188 NA non-coding upstream 956152 1033660 ~ 1035682 (-)
AMCG00003400 abracl,LOC107727609,LOC107558932,LOC107553474 other upstream 867715 945223 ~ 957196 (-)
AMCG00003423 NA other upstream 2320134 2397642 ~ 2401895 (-)
AMCG00003422 NA other upstream 2349889 2427397 ~ 2438821 (-)
G531 adck3,coq8a,LOC107602173,LOC107675039,LOC107727627 other upstream 3317149 3394657 ~ 3430272 (-)
AMCG00003444 NA other upstream 3458664 3536172 ~ 3538967 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_012192 itsn2b coding NC_007128.7 CM002901.2 30473507 ~ 30521043 (-)