G379482


Basic Information

Item Value
gene id G379482
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000189
NCBI id null
chromosome length 4726117
location 136040 ~ 143326 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU433831
ATTTAAAACCGTCCATGCGAGTTCAGTAGATCTACCTTAATATTATAAAGCGACGAGAATATTTTTGTGCGCACAAAATAACAACTTTTCAACAATATAGTGATGGGCCGATTTCAAAACACTGCTTCGGAGCTTTGTGAATGTTTTTAGTACCTTTATGGATCTTGAGAGAGGAAATGTCATTGCTTTGAATGCAGGCCTCACTGAGCCATCGGATTTAATCAAAATATCTTAATTTGTGTTCCGAAGATGAATGAAGGTCTTACGGGTGTGGAACGACATGAGGATGTCAGCAGCCTCCTCTCCCCTCAGTGGGAACAGGAGGCAGCCCACTCCTACTCTCACTTGCGTCACGGAAAGGAGAGAGGCTTCCGAAAGTGCAAGACAGATGGGAGAGGCATCCATTGATGAGAACTAAATCCACACAGACTGCGATTGAGGCATTTGGCACTCTTGTACTAATGCATTAGTGAGTGGTACTGTAATGTGAGAGTTGTGTGCATAAGATGCAGATGAGTAATACAAGAAGAACATTTATTTTGTTAGATCCTGTGGGTATTTCTTATTGAGTAAAATTTTAGTGTTACTTAATATTATTAATCTTAGTCGCCAAGATCTGTCCAGGATCTCAAGAACTAATTTCAGTTTATTTTCTAACCTGCAGCCTGGGAAAATATTTTCTTATCAGTACTTATCCAATCTGCTGAAGGCAGTGCTTTCTGCTATAAAAACTCTTTTCTTTTCTTTTCTTTTCTTTCTTTGCAGTAGTATTCTGAAAATGATTTCCTGAAATGCTTTTGTTGTAATTCAATAACCTGTTACATATGGAAGACTCAATGAGAGGGTACAACATCATCTGGTTCTCTGAATTGCCATTGCCATGGCAACCTGATGCACATCCGTATGACATCACAGCCCACTCAGTCAAACTAGCAGGGACAGAATGTGATTTGAGAGTACTCTGTTTGAGCACCTGCAGTCTGCAAGAGTCTTTGACCAATTATTATTATTATTATTTAGTCAGAAAAAAAAAAAAAATCTTTTTTTTTTTTTTGATATGGTTCAGTTTATTGAAACTTTAGACAAAATATTTTAAAAATATATAATATATAATATTTTAAAAATATATCCCCCAAAAAGTTTGCATGTGTTTTTCGTTGAGTGTCAGTTGCTGATATTTATATGGCCAAAAATTAAGATAAAATTCTGATAGCTTGTAATGTAAATCAATGAGATCTTAATAACAATATAACAAATATAAAATGTGGGAGGCAAAACATATAATGAAATATAATGATGATTGAGAGAATGTTTAGAGAATGTCAAAATGATGTGGATAATGTAGGGAATATTGAATGAGGGCATAGGGGGCGATTTCGGACACAGCCATTGTTTCTATGGTTACTGATTATGTTCTTCACCTGTGTCTTGTTTGGTTGATCATAGGGCTGTGCGATTTTTCCGATTAATTCGAATTTAATGTTTTGCCTCAATTTTATTATTTTTTAAATCGAGAAATCACGATTTTGAATAAAAATGTTAGCAAGCGTTACAATTGGACATGTTGACAATACAGCAATGATAACCGTATTAGGAGAAGAAAATTATCCTTCATGATGGCGCCGGCGCGCCTGATTAACCGCTCTCATGTGACGGTCTATGAACGTAGAACACATCACTATTCTTAAGCGGCTGTTCGTTCAGTAATGCGTTATTGCGTTATAAAAATGAGACGCAGACAGTGGAATGAGAAAAAAGGCAGAGATATTAAACGCAAGTTGAGCTTTTTTTTTTTTAACTTGACCGCCGTGTTTTAGAATGCTGTTTTATATTTTATGTTTGCATCATGGTGACAGGCTAAAAGCTGCTGTTGTTTTCTGTTTTTACAAAGCATTTGCTGTTAATAATAGCCTATTACTGGTGTTATTTATTGCTATTACTTTTGGCTAAGAAATATTTAGCATTTTCTTATTTTATATTATTTCTGATTATATAGGATGTGTTTAAGATAAGTTTGTACAACATTTGCCTTCATATTTCAGGTATATTTCAGGTATATTTCTGGAAAGATATTTAACAGATTGTTTTACATTTACACCATGTTGATCACT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU433831 True 2111 lncRNA 0.35 2 136040 143326

Neighbor

gene id symbol gene type direction distance location
CI01000189_00086672_00092620 SLC4A1AP coding upstream 43420 86511 ~ 92620 (+)
CI01000189_00183881_00277704 BRE, BRE.L coding downstream 40555 183881 ~ 277704 (+)
CI01000189_00297654_00300990 FOSL2 coding downstream 154328 297654 ~ 301458 (+)
CI01000189_00322834_00332685 MOCS1 coding downstream 179508 322834 ~ 332750 (+)
CI01000189_00438982_00445216 ASMT2 coding downstream 295656 438982 ~ 445645 (+)
CI01000189_00448469_00457564 JADE1 coding downstream 305143 448469 ~ 458185 (+)
G379486 NA non-coding upstream 76579 59169 ~ 59461 (+)
G379470 NA non-coding downstream 2811 146137 ~ 151415 (+)
G379515 NA non-coding downstream 41602 184928 ~ 185277 (+)
G379516 NA non-coding downstream 123691 267017 ~ 268894 (+)
G379481 NA non-coding downstream 139628 282954 ~ 283375 (+)
G379519 NA non-coding downstream 165652 308978 ~ 309182 (+)
G379600 NA other downstream 332289 475615 ~ 496908 (+)
G379799 NA other downstream 869220 1012546 ~ 1012903 (+)
CI01000189_00987665_01058757 PACRG other downstream 872705 987525 ~ 1059385 (+)
G381120 NA other downstream 2695895 2839221 ~ 2841125 (+)
G381491 NA other downstream 3482410 3625736 ~ 3626855 (+)

Expression


Co-expression Network