G379943


Basic Information

Item Value
gene id G379943
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000189
NCBI id null
chromosome length 4726117
location 291768 ~ 303419 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU434375
CACATGAATTTGGCCTAAAGCTCAACACATAACTGCAAAACAGCCATTAATGTTTTTAAATGGACTCACTTCTTACCAAAATCTCAAACTTGGTAAATCATTTTCAACCTCATACATAATCAATACAAAACTTGATCAGGTGAAATGAGACAATGGGTCATCCATTTATAATAATGCAAGATAATGAATGCACCTTTAACCAAAACATCAGTCTGGACATTTAAAATGTATGTGTATAGAGTGATTCTTCAAGTGAAAGTAAACCCCCAGTAAAGCATATGGCCAAATTAGTATCCTAACATACAAGTTTATTTATTTTTTACATAAAGTGCAGCTCGCTAAATCTTGATATTCAGAACTACAGAAGAAGCATTGATGACCTATGAACAGGAAATATTGTACATAAAAATGTACATACTGAATGTACATGCTTATTTTGCTCATTGTTTCCTTTACTTCTTCATCCCCATTTATGAAATAATGATTTTATGTATTTATCAAAACAAATATTATTGATGTCTTATATTGACATTAACATCATTTACTGCTACGGATAAAGCAAAGCTGTCTATCAAAGTTAGGATGAATAAATCTGCATTTTTGATTATGTGCAGAAATTAAGAGATGAATGAATAACTGATGCATAAAGCAGGTGCATTCAACCATCTTGTGATTGGTTGAACACAGAAGCAGCACATTGCAACAATGAGATATCCAACAAACCCAAAACACTGTGCACAAATAAATAAATGCACAAGCAAAATACGACTATCCAAAAAATACCACTTTGGAAATGTTTTTATTATCATTATAATAAATTTAAATTACCAAATGAACAAACACTGCTTTACATATTGCTGTTTTTGTAGGTTGTTTTCTGTCTTTCAACAGTTAAAGCAATAAAAAAAGAGAAAGAGAGAGAGAGAGAGAAAGAGAGAAATACAGACCGATAAGCAGGACATGTGCAGAAAGCTGTACAGATGGCTTGCTCAAAATTACACAGGGGTCAAAGACTGACAGAGAACAGTTTACAGCACACTGTCCATAAACATCTTTCTTGTTTTTTTTTTTTCTTTTCTTTTTTTGGTATTAAATTGGTTTTTGCAACTAGAAACGCTCATACTCGATTTAACAAACACTGAAATCGTCTCTTAGATCCTTGAAAGCTCCTGACATAAATAAGCAACAAAGTCCTTCAAATAGAAGCCACATTTGTTTTGTTTCTGTTTGCTGCATACTGTACAACAAAATACTCCCATTCACCCTCAGTTATTATCTGACTGTGGCAACAGTAACCTTGAGAGCTCTCTGAAATTCAGCCTCATTTTCCAAGGAATGTTTTTAAAGAAATATTGCAGTTTGTATCTTTTCTTCAGTATCTGATGCACAACTCACCTTTTGCATCAAACTTTCAATATCATTCTGCATTCCATTTAATCCATCATTGTAAGGAATGGTGTTTTATTCGATTGCAAGGTTGCTGACAAAGTGCATCTCTTCTCAAGTGCGGCAATCAAAGCCAACCAGTGTTTCAGGGAGAAGTGCTCATATGGCTGATGTATTTAATTCAAACTGTACCCTGAAAAAAGGGCCAGCCAAGACATAAAAGTACATATTATAAAAGTAATACATAGTTTTCTTTTCTTTCTTTCTTTTTTTATTTGAAAACCACAGTGTGCGCCAATACAAAAGCGGTATTGCCATGTCAGGGTTAGAGGCAGAGCCTAATATGGCTGGAGTTTCCCTCATGTACACCGTTATATTGTGTTGTGTGTGCAATTGCTTCTAGTAATGCTTGTATGGCTCACTGACACAAGACAAAAATCCCTGACAGTAGATTCGCTGATGCTATAAAGTGTTTTTTTCTGTTTACTTTACATAACAAAAGCTATGTAAATTTGGCAAATTATCTTAGTGCTTGTGCCGCATATACAAAATATCAACAAAGGTCAGCATTTTATTATACAAGATGGTTCTTTCGACACTCAGCAGTCAGGCTCATCCAGTGAACCCTAAATATTATAAACAGCAAGACACAAAATACAATGGGACAATATTCACACGTCACAAATACAAGGATAATGACGTTCTGAGGGCGTAGTGTCCAATGTCTGATTCTGTACCTATCAAGAATTCAATTTTCAAGCAATTCCCCTCGCTTTTTAGTCAGCAGGAAATACCAAGCGGTCTGAACAGCGGTTTCCTCCAACTTTTTTCGTCTTCATTACAAAACCTCGCCACTGAAATAGCAAGTGGAATTCGCACGTACATTTAAACAACGACAACAAAAACTCTCTTCTGAAACGTTTAAATAAAACGAGCAAATTAGCCCTTGAGGGTTCTCAGCTTGGTTGAGGTGAAGTCCCCACTCAAATCCCAGCTGAGCGTGCTCTGGAGATCCACAAGAATGATGAAAGTCGAATTTTCCTTCAAAGCGCCAACAGGGTGGGAGAATTCAGGGAATCTGATGATTGGTCACCGCTGCTGCTGCTCCGACGGTGGGCTTTGGAGCAGGACTCCGACGAGGGCGATGGGCTCTCGGGCTCGAGCATGCTGGGGTATGTGAAGATGAGGCTTGGGTTGTTCGGGGTGGACACCGGGGTGGAAGCAGCCACCACGGGCGTGTTGAGGCTGTCTCCGTCAGAGCAATACATGCCGCCACCTAGGCAGATGGGCTTGATGACCGAATGCTGGGCTTTTTCTTCGTCCTCATCGTCGTCGTCATCTTCCAAAGGCTCCTGTTTAACCACCACTGGGTTGAGAGTACTCATCGGACCCCGGGGACCCAGGTTGGAACGCATGGTCAGAGAAAGGGGCGCACACTGCTGGGAGTGCAAGCTCTGATGGCGTTCTTCAAGTGGCAGTTTGCACACAGGGTTGTGGGCCACCAACATAAATTCCAACTTGTCCTTTTCCTTCTGCAGGGTCTCGATTTCTTTCTGCAGGTCAGCCTTCTCCTCCTCTAACTTCTCAGTTTCCTTGAATGAAAAAAGAAATACAAAGAATGATTATGCTGTATTTTGCCTGATACTCTTTTGGCTTGTGATTGTCGTCAGGGTGTTATGTAGTGGTGCTCTTGGTGGTTTCTTACTGGATTTAGTCAAAAGACCTCACCCCCAAATGTCTATATATGATATTCTGGTCTTTAATGTACAGTGAGCCTATACTAGGGCTGTACCAGGGTTGCCAAGTATGCGGTTTTCCAGCGGAATTGGGTTATTTATTTTTTTATTTTTTGCATAAATTATATTTGACTGAAATTCTTGTATTGAAATATTTGGTAACCCTTCAGTATAGGGAACACGTATTCACTATTAACTACAACTTTTGCATCAATTAACTCCTAATTTACTGGTTATTAATAGTAAGGTAGTTTCTTTAGCGTTTAAATTTAGGTACTAGCTAGGATTAAGGGATGTAGAATAAGGCTTTATAAGTACTAATAAACAACCAATATACTAGTAATATGCTAGTAATATGCAAGCTAATAAGAAACTAGTTAAAAGTGAGAATTGAACCCTAAAATAAAATGTTACCAAATATTTTATATTCCTTCAATGATAAAACTGCACTAGATGTTAAAGGGTTAGTTCACCCAAAAATGAAATTTCTGTCATTAATTGCTCACCCTCATGTCATTCCACAACCGTAAGACCTTTGTTCATCTTCGGAACGCAAATTAAGATATTTTTGATAAAAGTTTTTTTTTTCTTTTTTTTTTCTCCCATAGAAAGCAACGGAATTACCACATTCAAGGTCCAGAAAAGTACTAAAGACATCGTTAAAACAGTCAACATGACTACAGTGGTTTAACCTTAATGTCATGAAGTGACGAGAAAACAAAATAACGACTTTATTCAACTATTTTAACAATGTCTTTACTACTTCTCTGGACCTTGAATGTGGCAATTTCATTGCTTTCTATGGGAGATAAAAAACCTCTTGGATTTCATAAAAAAGATCTTAATTTGTGTTCCGAAAATTAATGAAGGTCTTGTGGATTTGGAACGACATGAGGGTGTGTACTTAATGACAGAAATTTCATTTTTGGGTGAACTAACCCTGTAAGTTTCATGATCACTATATATAGTGTTTTTCATTTTGCATAACGGTGACTGTAAAATATGCATTTTAGGTATGGGAATGGCATGTTTTGTTATTTGGGATATGGTTATTGGGTTATTTTTGACTGGCCATCAGGCTAGTTTTGGTTACACAGACCTGGCAACCCTGGCCTGCATATATATATATATTATATATATATATATATATATAATATATATATAAAAAATAAAACTGAAAACGCAACATGGCTTAGTGCAATAATCAAATTGCAAATGTTGTCCCGAACCTTTCCCTGATTGAACTCTCAGAGCACTTTAGCACTATTAGCACTATTAAAGACATGCCCACAAATAAATTTAAGCTGTTCACATTCCTTTGTTGAATGCTTGAAAACAAAACCAAGTGTTTCGAAACAATCATCCAAGCATCCAGAAAGTTCAAAGACTGACATAACAATGTGACTAGACAGTCAAAGAAAGCTGTAGCTGTCTTTGCCTTATTAATTTGTCTATGAGGAAGAAGGAAACTAAAATGAAAACAAACGCTGAATTTACAAAGAAAGAAACACATTGGAAGAAAGAGTCTAGTTATTGTCACAGGGGATGCAGTTCCTTATTTGGTGAGGAATGAAGCAGAGATTGGGGGAAGGGAAGAGAGAAGATAGTGTGTGGGGTTTGATGGTTAGCTGCGGTTTCCTCCTCGAACAATATCAGATGTTTGCTTCCCTCCAACCCCCTGTAGCACATTCCTCCTTCATGTTTCAGGTCTGACAGCCTGAGAGATGCCATTATAAAGCTAAGTAGTTCAATTACAGCCAGCATTGTCTGGGACTCGGGGCATTCCCAAGACTGCCAGACAACACTGGTCTTCTGTGGTTGTAAAACTTGTCTTTTTAGGGTCCCTTCAGATTTTAACCACTGAGAATTGCATGAAAATAAATATAATATTTTGTAGGCATGTCATTTGGGGTATTTGGTAAACATGTTTTCCATGTTAGTAATTTTAGAAAATGCTTGTTTCTTTGTAACAGCCATTAGAAAACTCACCCCTTGCAGCATCTCGGTCAGTTCTCTTCTGCGGTTCCGACATTTTGCTGCAGCTAGTTTGTTTCTTTCTCGCCTGACTCTCCGTTTTTCTTCTTCCTCTGGGGTGAGCTGCAGATAAAACTATGAGTGAGATTTTACAGTTGTTTGTCAGAAATCATTGTGAAAAATCAATCCTTGCATCTTGGAAAAAATTTTTTGTTTCTGTACCTCAAAGGTGAAAATTGCAACACTAACCTGCTCATCTCGCTTACGTCGACCACGGGCGTCGCCGATGGACCGGATGACCCCGGGCCGTGTGAGAGCTGTGTGGCTGAGGAGGCCCGGGCCGCTAGACACAGACAGGCCGTACGGGTGAGGCCGGGAGTACGGATTAGACATGGATGTGATTACTGTGGGCTGAACCATCCACTGCAAGTCCTGACTGGTCGTTATGGCATTAATTGTTGGAATAAAGGCACTACTAGAACCAGGCATGTCTATTCTGTACTTCTGTGGAGAAAAAAAAAAGAAAAGTATTAAGATTAATTGGAAGAAACTCTGGATTAAGAAGACTCTGACTTTCACCGTACATTAAACACTGTATGATTCATTTTTGGTCTTTGTTACTGCAGTCCCCTGAGCCACCCACTTTTTAGCCATTTTACAAATTCCCATCATCACAGACTAATGAATCATTCCACAAGCTACCTCGCTCTGCGCCCTCTTGACTGCTTGACCCCTTGAGCGACAGGGTGACACACTCACGGTGAATCATGGGAAAGCCCACAACCCTCCCTGACACAAGCCGACCAGGGTTAGATAATAGCCGCTGTGATGCAATGGGCAACAGATTTACCGCTGTCCGGGAAGCTGAACTGGGACCCCGCGCCAGCACATTCCATCCACCAAATTCCATTCCATTCACACATTTCTGGTGGGATTTTAACGGGAAACTGACTTCATGTGACGGACAAAGTTTACCGCAAATCATTTGGAGGCGAATGAATTACGGGAAATACCAGCAATCATTATGTGCGGAATCAAACTCATCATTATAGATCAAAGAACATATCTATCTATAGATGTCGCCAGTGGTACAATAAAGTTTATTGGGGGAGGGGAAGTATCAACAGAACACTTGAGTTTTACAGTCCAAAGTGGGGGTCCAGCTTATTTTGTGTAAGTGATAGATTTTTTTAAATGTATGAATACTTTTTAGTAATAAAATTTTGTGGATTCATAACACTTGGTTGCGATGGCTTGATGGTGGATATAAGTAACTAAAATACAATTTTACAACAGTACCAGTCGCAACCAATTGATAGACCTATTTAGTTTGACATGTCGCCATAATGCAGTGATAAACAGAAAAAGTGGAAATATTTCAACACTTCACTGCAGTAACAATCTGTTTCAGAATGAGTTCATTTATTCCGAGTTGAGTAAAACGTATGAGTGAACATTGGTGCACAGGAAATACCCATAATTAATATATTAGTATAGATGTTAGAATCAACGCTACAACCATAAACGGGTAGGCCATCAGTACTTTTATTAATTACAATAATAATAATAATGATAATAATAATAATAATTATCAAACTACACGATAAAACCAAATGCATAGTTAATGCATTTGCATTACACCTAATGCCTTTTGCCTTTATATCTGTCATTGGCTGTCGTATGAGTTTCTGCCATCTGATCTGATAGCTGAGCATTATGGAAAAGAACAAGAACAGGAGTGACGCGCGTTCCCAGTGATCGTGAACGTCACTCGTTGTCTGGCACAGTTCTGATCTCCTCTTAAGCAGGGAAAGAGAATTATAGCTGTTCGCAGGGTAAATTAATGCTGCGATTTCTAGTCATATACTATCGATAACTTTGAAAGAAGAAATCATATTGGTGTGCACATAAGAGAAACTATTATCATGCGATTACTATGTAGCCTACTTACAAAAAGTGGTAGATATCAGATGATATAACCATGGTATTTTGAATGATACACAATACTCCATCGCATATGTCCATAAAACATAGCATTAGTCATAATGAAGACAACACTGATAAATAGATTAGCTCCTTAACCCAGATTTTATATGAGACGCATTCGTGTTAATCTGATAACGTCTCTAGCCAGTGTATGCACGTGCCTATACTGTAATATGAGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU434375 True 7261 lncRNA 0.38 4 291768 303419

Neighbor

gene id symbol gene type direction distance location
CI01000189_00166353_00175279 NA coding downstream 116318 166348 ~ 175450 (-)
CI01000189_00101529_00113231 NA coding downstream 178537 100988 ~ 113231 (-)
CI01000189_00078751_00085530 SUPT7L coding downstream 206238 78730 ~ 85530 (-)
CI01000189_00340265_00391583 DAAM2 coding upstream 36846 340265 ~ 391583 (-)
CI01000189_00461716_00469154 NA coding upstream 157592 461011 ~ 469298 (-)
CI01000189_00477967_00490706 RCAN3 coding upstream 174254 477673 ~ 492947 (-)
CI01000189_00496400_00496746 NA coding upstream 192496 495915 ~ 497348 (-)
CI01000189_00506407_00508897 NA coding upstream 202936 506355 ~ 508897 (-)
G379907 NA non-coding downstream 244565 46880 ~ 47203 (-)
G380066 NA non-coding upstream 293701 597120 ~ 597442 (-)
G380070 NA non-coding upstream 300100 603519 ~ 603731 (-)
G380071 NA non-coding upstream 301802 605221 ~ 605571 (-)
G380097 NA non-coding upstream 341869 645288 ~ 646111 (-)
CI01000189_00764790_00765233 ID3 other upstream 449838 764674 ~ 765776 (-)
G380177 NA other upstream 590801 894220 ~ 898517 (-)
CI01000189_02961166_02963382 NA other upstream 2655689 2960570 ~ 2963454 (-)
G381317 NA other upstream 2695454 2998873 ~ 3006444 (-)
G382060 NA other upstream 3527208 3830627 ~ 3832613 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
tiger barb (Puntius tetrazona) G186502 LOC107656746,LOC107553732,LOC107726077,LOC107697532 non-coding NW_025048284.1 JAEQBD010000629.1 233552 ~ 238094 (-)