G382060


Basic Information

Item Value
gene id G382060
gene name NA
gene type unknown
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000189
NCBI id null
chromosome length 4726117
location 3830627 ~ 3832613 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU436781
ATGCTACAGAGCAGTCTAAGGCAGGGGGCGGGTTCTCCTTTGCGTCCATTAGCAACAGCCTCTTTGGATCTGGGCGGCACAGGGATTGTCATGGTGATGGGCTTGTGGAATTTCCTCCTTCTGGGCTCCACAGTAACAATTGGGCTGAATGATGCACGGTTACCAGTGATGGTCCACACCAGGTCCTCTGGCACTGGCTGTGCCTGTAGTCCAACACGAATCTTCTTTGTAAGTGCTCCCTGGGGAAAGGCAGCTTTCACCATGGGAACCGCCTCACTACTCAGGACTCCGCCCTCAGGTCCCATGTGATCACTTTCTTGCTTGATGCGTGACACCACCGCAAAGTACTGTGGGAAATCTTTTGTGATGATGCGGCAGATACGTTTTTTCTCAAGCTCTGCTGGACTGTCCATCTCCTCATCCATGCCATTGAGGATCGAGGTGAGTTCTGTCACTCTGCAGTCATAATGATGTTCTTTCCAGGTCTCTCCATTATCGCTGCGTAGGACGATCAGCTCTCTCTCCTTTCCCCGCATAGAGCCAAAATGAGGAATTTCTACTATCACAGGCCCCAAAAACTGTGCCCCGGATGGCCCCATCTCCACCAGTCTGCTCACAAGACCCTCCCCCTCCACCATAGGGGGTGGGTATGCCAGGCGGTGGCGCTTTGCTAGGCGGCAGGTGATTCGTGTTGGTGCTGGACACTTCCTGGGTGGAATGATTATACGCATACCATCATGACGACTTCCTCTCATCGACCCACCCCGAGCGTCCACCATGAAACT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU436781 True 785 TUCP 0.54 4 3830627 3832613

Neighbor

gene id symbol gene type direction distance location
CI01000189_03699588_03706531 CDK1 coding downstream 123793 3699248 ~ 3706834 (-)
CI01000189_03608917_03613975 FAM175B coding downstream 216652 3608235 ~ 3613975 (-)
CI01000189_03557950_03558676 DTD2 coding downstream 271951 3557808 ~ 3558676 (-)
CI01000189_03546199_03556875 NA coding downstream 273752 3546199 ~ 3556875 (-)
CI01000189_03517928_03524647 VSX2 coding downstream 305915 3517283 ~ 3524712 (-)
CI01000189_03903426_03904603 NPY4R coding upstream 70321 3902934 ~ 3904603 (-)
CI01000189_03950993_03958722 NA coding upstream 117560 3950173 ~ 3958722 (-)
CI01000189_03980640_03981210 NA coding upstream 148000 3980613 ~ 3981210 (-)
CI01000189_03983572_04013988 LARP1B coding upstream 149753 3982366 ~ 4014133 (-)
CI01000189_04017195_04030340 NRDE2 coding upstream 184408 4017021 ~ 4030340 (-)
G382094 NA non-coding downstream 74703 3755718 ~ 3755924 (-)
G382093 NA non-coding downstream 78626 3751722 ~ 3752001 (-)
G382036 NA non-coding downstream 118175 3712227 ~ 3712452 (-)
G381978 NA non-coding downstream 132930 3696886 ~ 3697697 (-)
G382003 NA non-coding downstream 143348 3638729 ~ 3687279 (-)
G382051 NA non-coding upstream 66878 3899491 ~ 4044999 (-)
G382044 NA non-coding upstream 132963 3965576 ~ 3976937 (-)
G382132 NA non-coding upstream 212624 4045237 ~ 4045696 (-)
G382133 NA non-coding upstream 214650 4047263 ~ 4047563 (-)
G382134 NA non-coding upstream 215336 4047949 ~ 4048367 (-)
G381317 NA other downstream 824183 2998873 ~ 3006444 (-)
CI01000189_02961166_02963382 NA other downstream 867173 2960570 ~ 2963454 (-)
G380177 NA other downstream 2932187 894220 ~ 898517 (-)
CI01000189_00764790_00765233 ID3 other downstream 3065250 764674 ~ 765776 (-)
G382052 NA other upstream 52949 3885562 ~ 3892909 (-)
G382153 NA other upstream 312977 4145590 ~ 4146084 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00018017 NA coding CM030131.1 CM030131.1 32607413 ~ 32652684 (+)