RNA id: TU436781


Basic Information

Item Value
RNA id TU436781
length 785
RNA type TUCP
GC content 0.54
exon number 4
gene id G382060
representative True

Chromosome Information

Item Value
chromosome id CI01000189
NCBI id null
chromosome length 4726117
location 3830627 ~ 3832613 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATGCTACAGAGCAGTCTAAGGCAGGGGGCGGGTTCTCCTTTGCGTCCATTAGCAACAGCCTCTTTGGATCTGGGCGGCACAGGGATTGTCATGGTGATGGGCTTGTGGAATTTCCTCCTTCTGGGCTCCACAGTAACAATTGGGCTGAATGATGCACGGTTACCAGTGATGGTCCACACCAGGTCCTCTGGCACTGGCTGTGCCTGTAGTCCAACACGAATCTTCTTTGTAAGTGCTCCCTGGGGAAAGGCAGCTTTCACCATGGGAACCGCCTCACTACTCAGGACTCCGCCCTCAGGTCCCATGTGATCACTTTCTTGCTTGATGCGTGACACCACCGCAAAGTACTGTGGGAAATCTTTTGTGATGATGCGGCAGATACGTTTTTTCTCAAGCTCTGCTGGACTGTCCATCTCCTCATCCATGCCATTGAGGATCGAGGTGAGTTCTGTCACTCTGCAGTCATAATGATGTTCTTTCCAGGTCTCTCCATTATCGCTGCGTAGGACGATCAGCTCTCTCTCCTTTCCCCGCATAGAGCCAAAATGAGGAATTTCTACTATCACAGGCCCCAAAAACTGTGCCCCGGATGGCCCCATCTCCACCAGTCTGCTCACAAGACCCTCCCCCTCCACCATAGGGGGTGGGTATGCCAGGCGGTGGCGCTTTGCTAGGCGGCAGGTGATTCGTGTTGGTGCTGGACACTTCCTGGGTGGAATGATTATACGCATACCATCATGACGACTTCCTCTCATCGACCCACCCCGAGCGTCCACCATGAAACT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU436816 lncRNA downstream 74703 3755718 ~ 3755924 (-) True G382094
TU436815 lncRNA downstream 78626 3751722 ~ 3752001 (-) True G382093
TU436752 lncRNA downstream 118175 3712227 ~ 3712452 (-) True G382036
TU436680 lncRNA downstream 132930 3696886 ~ 3697697 (-) True G381978
TU436711 lncRNA downstream 143348 3638729 ~ 3687279 (-) True G382003
TU436771 lncRNA upstream 66878 3899491 ~ 4044999 (-) False G382051
TU436760 lncRNA upstream 132963 3965576 ~ 3976937 (-) True G382044
TU436770 lncRNA upstream 207928 4040541 ~ 4044999 (-) True G382051
TU436858 lncRNA upstream 212624 4045237 ~ 4045696 (-) True G382132
TU436859 lncRNA upstream 214650 4047263 ~ 4047563 (-) True G382133
CI01000189_03699588_03706531.mRNA mRNA downstream 123793 3699248 ~ 3706834 (-) True CI01000189_03699588_03706531
CI01000189_03608917_03613975.mRNA mRNA downstream 216652 3608235 ~ 3613975 (-) True CI01000189_03608917_03613975
CI01000189_03557950_03558676.mRNA mRNA downstream 271951 3557808 ~ 3558676 (-) True CI01000189_03557950_03558676
CI01000189_03546199_03556875.mRNA mRNA downstream 273752 3546199 ~ 3556875 (-) True CI01000189_03546199_03556875
CI01000189_03517928_03524647.mRNA mRNA downstream 305915 3517283 ~ 3524712 (-) True CI01000189_03517928_03524647
CI01000189_03903426_03904603.mRNA mRNA upstream 70321 3902934 ~ 3904603 (-) True CI01000189_03903426_03904603
CI01000189_03950993_03958722.mRNA mRNA upstream 117560 3950173 ~ 3958722 (-) True CI01000189_03950993_03958722
CI01000189_03980640_03981210.mRNA mRNA upstream 148000 3980613 ~ 3981210 (-) True CI01000189_03980640_03981210
CI01000189_03983572_04013988.mRNA mRNA upstream 149753 3982366 ~ 4014133 (-) True CI01000189_03983572_04013988
CI01000189_04017195_04030340.mRNA mRNA upstream 184408 4017021 ~ 4030340 (-) True CI01000189_04017195_04030340
TU435927 other downstream 824183 2998873 ~ 3006444 (-) True G381317
TU435899 other downstream 867173 2959108 ~ 2961667 (-) True G381299
TU434639 other downstream 2932187 894220 ~ 898440 (-) True G380177
TU434342 other downstream 3065250 753257 ~ 764109 (-) True G379912
TU436773 other upstream 52949 3885562 ~ 3892909 (-) True G382052
TU436879 other upstream 312977 4145590 ~ 4146084 (-) True G382153

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
bowfin (Amia calva) AMCG00018017 True 15050 mRNA 0.56 37 CM030131.1 32607413 ~ 32652684 (+)