RNA id: TU436858


Basic Information

Item Value
RNA id TU436858
length 460
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G382132
representative True

Chromosome Information

Item Value
chromosome id CI01000189
NCBI id null
chromosome length 4726117
location 4045237 ~ 4045696 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTAATGTATTTAATACACATACACACGCTTAGCCACGTGCAGCTCATAAGTCAGAAGGGCAGAGAGACGTGGGCTGTTAGCACTATCTCTCTCTCCTCCCACACGCCTGTCACTGTATCCTGTTTCTCACTGCTGAGCACATCTCCACACCCCCCCGAGCACACTGTCACTGAGCTCAGACTTTAAATAGCTGTAAATTAAGAGCAAGTCTGAAAATTGTGCACAAAACACTGACAATACATCTGATGCGAATGATGTGGTCAAGTGATCGATTGGAGAAATGCAAAATACTAATTGCAATAATGAACGGACATACTGTAAATCTGCTGCAGGGATAAACTCTGCCTGACTACTGGATGTGGATCTAATCAGCTGTAGACTTCACACACTCTTTCTCTCTCTCTCTCTCTCTCTCTTTCCATCTCTCCAGGGTCTCTTCTCCCGCTCCCACATGGTTTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU436771 lncRNA downstream 238 3899491 ~ 4044999 (-) False G382051
TU436770 lncRNA downstream 238 4040541 ~ 4044999 (-) True G382051
TU436760 lncRNA downstream 68300 3965576 ~ 3976937 (-) True G382044
TU436816 lncRNA downstream 289313 3755718 ~ 3755924 (-) True G382094
TU436815 lncRNA downstream 293236 3751722 ~ 3752001 (-) True G382093
TU436859 lncRNA upstream 1567 4047263 ~ 4047563 (-) True G382133
TU436860 lncRNA upstream 2253 4047949 ~ 4048367 (-) True G382134
TU436861 lncRNA upstream 3189 4048885 ~ 4049228 (-) True G382135
TU436862 lncRNA upstream 3617 4049313 ~ 4049553 (-) True G382136
TU436863 lncRNA upstream 7573 4053269 ~ 4053492 (-) True G382137
CI01000189_04017195_04030340.mRNA mRNA downstream 14897 4017021 ~ 4030340 (-) True CI01000189_04017195_04030340
CI01000189_03983572_04013988.mRNA mRNA downstream 31104 3982366 ~ 4014133 (-) True CI01000189_03983572_04013988
CI01000189_03980640_03981210.mRNA mRNA downstream 64027 3980613 ~ 3981210 (-) True CI01000189_03980640_03981210
CI01000189_03950993_03958722.mRNA mRNA downstream 86515 3950173 ~ 3958722 (-) True CI01000189_03950993_03958722
CI01000189_03903426_03904603.mRNA mRNA downstream 140634 3902934 ~ 3904603 (-) True CI01000189_03903426_03904603
CI01000189_04058639_04097730.mRNA mRNA upstream 12230 4057926 ~ 4097730 (-) True CI01000189_04058639_04097730
CI01000189_04120947_04130707.mRNA mRNA upstream 74641 4120337 ~ 4130707 (-) True CI01000189_04120947_04130707
CI01000189_04271632_04393877.mRNA mRNA upstream 225936 4271632 ~ 4393877 (-) True CI01000189_04271632_04393877
CI01000189_04432088_04472364.mRNA mRNA upstream 386238 4431934 ~ 4472706 (-) True CI01000189_04432088_04472364
CI01000189_04572894_04573508.mRNA mRNA upstream 527163 4572859 ~ 4573653 (-) True CI01000189_04572894_04573508
TU436773 other downstream 152328 3885562 ~ 3892909 (-) True G382052
TU436781 other downstream 212624 3830627 ~ 3832613 (-) True G382060
TU435927 other downstream 1038793 2998873 ~ 3006444 (-) True G381317
TU435899 other downstream 1081783 2959108 ~ 2961667 (-) True G381299
TU434639 other downstream 3146797 894220 ~ 898440 (-) True G380177
TU436879 other upstream 99894 4145590 ~ 4146084 (-) True G382153

Expression Profile