Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU434639 |
| length | 1513 |
| RNA type | TUCP |
| GC content | 0.45 |
| exon number | 9 |
| gene id | G380177 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000189 |
| NCBI id | null |
| chromosome length | 4726117 |
| location | 894220 ~ 898517 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU434593 | lncRNA | downstream | 120703 | 773205 ~ 773517 (-) | True | G380147 |
| TU434587 | lncRNA | downstream | 125511 | 768482 ~ 768709 (-) | True | G380144 |
| TU434585 | lncRNA | downstream | 127895 | 766019 ~ 766325 (-) | True | G380142 |
| TU434368 | lncRNA | downstream | 193027 | 693692 ~ 701193 (-) | True | G379936 |
| TU434362 | lncRNA | downstream | 211391 | 682502 ~ 682829 (-) | True | G379930 |
| TU434649 | lncRNA | upstream | 33010 | 931450 ~ 931696 (-) | True | G380185 |
| TU434666 | lncRNA | upstream | 77398 | 975838 ~ 976063 (-) | True | G380202 |
| TU434701 | lncRNA | upstream | 166801 | 1065241 ~ 1065587 (-) | True | G380237 |
| TU434706 | lncRNA | upstream | 184021 | 1082461 ~ 1083619 (-) | True | G380242 |
| TU434731 | lncRNA | upstream | 251454 | 1149894 ~ 1150228 (-) | True | G380266 |
| CI01000189_00859327_00862617.mRNA | mRNA | downstream | 31603 | 858786 ~ 862617 (-) | True | CI01000189_00859327_00862617 |
| CI01000189_00831218_00832634.mRNA | mRNA | downstream | 59134 | 831001 ~ 835086 (-) | True | CI01000189_00831218_00832634 |
| CI01000189_00797964_00824109.mRNA | mRNA | downstream | 70111 | 796650 ~ 824109 (-) | True | CI01000189_00797964_00824109 |
| CI01000189_00764790_00765233.mRNA | mRNA | downstream | 128444 | 764674 ~ 765776 (-) | False | CI01000189_00764790_00765233 |
| CI01000189_00744231_00759517.mRNA | mRNA | downstream | 134703 | 744103 ~ 759517 (-) | True | CI01000189_00744231_00759517 |
| CI01000189_01256704_01259709.mRNA | mRNA | upstream | 358216 | 1256656 ~ 1259895 (-) | True | CI01000189_01256704_01259709 |
| CI01000189_01289557_01297885.mRNA | mRNA | upstream | 390830 | 1289270 ~ 1297912 (-) | True | CI01000189_01289557_01297885 |
| CI01000189_01321624_01323067.mRNA | mRNA | upstream | 423007 | 1321447 ~ 1323388 (-) | True | CI01000189_01321624_01323067 |
| CI01000189_01342802_01344801.mRNA | mRNA | upstream | 444352 | 1342792 ~ 1344801 (-) | True | CI01000189_01342802_01344801 |
| CI01000189_01391124_01392266.mRNA | mRNA | upstream | 492202 | 1390642 ~ 1393944 (-) | True | CI01000189_01391124_01392266 |
| TU434342 | other | downstream | 128843 | 753257 ~ 764109 (-) | True | G379912 |
| TU435899 | other | upstream | 2060668 | 2959108 ~ 2961667 (-) | True | G381299 |
| TU435927 | other | upstream | 2100433 | 2998873 ~ 3006444 (-) | True | G381317 |
| TU436781 | other | upstream | 2932187 | 3830627 ~ 3832613 (-) | True | G382060 |
| TU436773 | other | upstream | 2987122 | 3885562 ~ 3892909 (-) | True | G382052 |
| TU436879 | other | upstream | 3247150 | 4145590 ~ 4146084 (-) | True | G382153 |
| species | RNA id | representative | length | rna type | GC content | exon number | chromosome id | location |
|---|---|---|---|---|---|---|---|---|
| zebrafish (Danio rerio) | TCONS_00022908 | False | 1434 | mRNA | 0.46 | 9 | NC_007128.7 | 27456804 ~ 27461230 (+) |
