RNA id: TU436816


Basic Information

Item Value
RNA id TU436816
length 207
lncRNA type inter_gene
GC content 0.33
exon number 1
gene id G382094
representative True

Chromosome Information

Item Value
chromosome id CI01000189
NCBI id null
chromosome length 4726117
location 3755718 ~ 3755924 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTTTGCTTCATTAGATATCACTTATATGTCACTTAGAATACAAAATTTACAACTGCTTGCTAGCAATTAGCTAAAACAGTAGCGAGTAACATTGCGCTGGCATGTTCCACGCTAAAGCTTATGTGCATGAAAATAGCAACATTACAAAAATTGCCCTTTACAGACATATAATTTATGAGAAGCACAAATATAAAACTCTGAACTTTG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU436815 lncRNA downstream 3717 3751722 ~ 3752001 (-) True G382093
TU436752 lncRNA downstream 43266 3712227 ~ 3712452 (-) True G382036
TU436680 lncRNA downstream 58021 3696886 ~ 3697697 (-) True G381978
TU436711 lncRNA downstream 68439 3638729 ~ 3687279 (-) True G382003
TU436705 lncRNA downstream 134629 3620874 ~ 3621089 (-) True G381998
TU436771 lncRNA upstream 143567 3899491 ~ 4044999 (-) False G382051
TU436760 lncRNA upstream 209652 3965576 ~ 3976937 (-) True G382044
TU436770 lncRNA upstream 284617 4040541 ~ 4044999 (-) True G382051
TU436858 lncRNA upstream 289313 4045237 ~ 4045696 (-) True G382132
TU436859 lncRNA upstream 291339 4047263 ~ 4047563 (-) True G382133
CI01000189_03699588_03706531.mRNA mRNA downstream 48884 3699248 ~ 3706834 (-) True CI01000189_03699588_03706531
CI01000189_03608917_03613975.mRNA mRNA downstream 141743 3608235 ~ 3613975 (-) True CI01000189_03608917_03613975
CI01000189_03557950_03558676.mRNA mRNA downstream 197042 3557808 ~ 3558676 (-) True CI01000189_03557950_03558676
CI01000189_03546199_03556875.mRNA mRNA downstream 198843 3546199 ~ 3556875 (-) True CI01000189_03546199_03556875
CI01000189_03517928_03524647.mRNA mRNA downstream 231006 3517283 ~ 3524712 (-) True CI01000189_03517928_03524647
CI01000189_03903426_03904603.mRNA mRNA upstream 147010 3902934 ~ 3904603 (-) True CI01000189_03903426_03904603
CI01000189_03950993_03958722.mRNA mRNA upstream 194249 3950173 ~ 3958722 (-) True CI01000189_03950993_03958722
CI01000189_03980640_03981210.mRNA mRNA upstream 224689 3980613 ~ 3981210 (-) True CI01000189_03980640_03981210
CI01000189_03983572_04013988.mRNA mRNA upstream 226442 3982366 ~ 4014133 (-) True CI01000189_03983572_04013988
CI01000189_04017195_04030340.mRNA mRNA upstream 261097 4017021 ~ 4030340 (-) True CI01000189_04017195_04030340
TU435927 other downstream 749274 2998873 ~ 3006444 (-) True G381317
TU435899 other downstream 792264 2959108 ~ 2961667 (-) True G381299
TU434639 other downstream 2857278 894220 ~ 898440 (-) True G380177
TU434342 other downstream 2990341 753257 ~ 764109 (-) True G379912
TU436781 other upstream 74703 3830627 ~ 3832613 (-) True G382060
TU436773 other upstream 129638 3885562 ~ 3892909 (-) True G382052
TU436879 other upstream 389666 4145590 ~ 4146084 (-) True G382153

Expression Profile