RNA id: TU436760


Basic Information

Item Value
RNA id TU436760
length 1971
lncRNA type antisense_over
GC content 0.43
exon number 2
gene id G382044
representative True

Chromosome Information

Item Value
chromosome id CI01000189
NCBI id null
chromosome length 4726117
location 3965576 ~ 3976937 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

NNTTCGAGAATGGGAGATGCAGTTCATGGAGAAATATGACTACGTTGGACGTTTGTTGAAGCCAGGAGACGAGCCGTCTGAATACACAGATGAGGAGGACATGAAGGATCATCAAAAACATGAATGATCTGCTGAATTATTACAGCAGCTGAAGCCCAGGACTGAGAAGGCCACCATCCAGAATTGTTAAACCCCAGCAAGAAAAACCCCTCAGAATCTGCCCTTTACCTCAGTCGTACGGTGTCCCCCTACTGCTCCATCACAGCGGAGATAAACGCGTCTGTCTAAAAGCCCCTGCTGTCCTGACTGTTCTTTTACCAAAACAGACCAATAGCCTGTCAGAGTTTCCTGTACTCTTCTTGTCTGCTCTTGATACTTCTCCTTAATCCAGCTCCTTTGTCCTTGCCCCTCCATCTTCCTGTCACACCTAAACACTCAATTTAAAGCATAAATACCATCAAACACTACTGTATACCTAAATCATCAGTCATGCAGTATAAACCCCAAATCCTCCGTCATTTACACTACAGTCCAATGGAAAGTGAAACGGCCTGAGGCTTTTATAGCATCCTGCACATTTGTGCATTCAGGCTTGGACTGACAATGTGAAGAGATGAATAAAAAGGAGGAAGGAGAAAACACTCAATACACATTCATTTTCTTTGGGGACTTCATTCATGACCTCAAAGGTCACGTACATAGAGCAGGGCAGATGCCTGGAGTTCAGTACACAACAGGTTAAAAACTGGGGTCTCTTTTAATTTTTTGCTTCCATTTGTTTTGTTGTACGTGTAGTTATTGTACCACAACACGCGTCTCAAACACTTCTGGAGCATTAAAATCTCATGCTTATTCGTTGACTGTGGAAACGTTGTTGTTTTAAATCAAAGTAAATGTCGAATGGAAGTAGTAAACAATCCAAAAGCCAGATTGTCTGCCATCAGCCAATCAATCCAAAGGTTGGGAGGGTCTGGGGTGGGCGGGTGCTCTTAGCAATTTTTGTATTGTGTGCACCACTAGTGTGTAGCGATTTTTGTCACAATGTGATTGTAAAACATTAGGGATGGGGAATGTTTGTGAGGGGTTGGGTATCGTTCGCATTCTCGCCATAAAACTGTTGTTTTATTTGAATTGTATAAATCTGAATGGCTGGTTGGGATGAAAAGGGAAGATCAGTAGGGTAGTTCAATTGGATCAGCTCGTCTGCTCATCGGTCAACAGAACTTTCCCCCTGTTAATGAAACAGTCAGCGTAGTTATTGTGCCTTATTTCCGTTTAAGTCTACTACAGAATAGTCAAGAGATGTAGAAAGCTACAGGTATGAAAACCAGAGGGAGAAACCGCAAAGATAAAACATGTTCTGCTCTGCCCTTTCCACATTATCTGCTTGTAGGGGGTTTTCAGAAGCCAAGGCATCTTTCACCTCCATTTCCTCACAGTTCGTACGACGAGGCGTGCTCGCATCTGTGAGCGAATCGGACACGGGAGGCTCGACCGCCATTATCGTGACCTTGTACATAGACTATATGAGCTATTTCAGTGTTACTGCCATATCTGCGCTGTTATTAAACTCCACGCACTGCTGTGTTGTACTGGCCAAAAGATCCATTGCTCTTTCTTTTTGTTTCCATCTCTTTTTCCCCTCTTTTTTTTGTGTCTCTGCTGAATTTATTTTTAATCGTGGGTAATTTTCAAATCCACCCTTAAGTGTTATATTTTGTTTTTCTTCTGGAGAGGGGAACTATGAGTTTGGAAGAATATTTTGTCTTTGCTGGGGAGGGGATGAGGCGAAATTCAAAAATTGTGGATTCTGTAAATATGTGTATCATTTTATTAAAGCATGTGCAGCAAACAGTGAGGTAATGCTGGCTCTCACGTCATGTATTTAAATGGAGTTTGCAAGGATGAGTGTGTGTGTGTGTGTGTTTGTGTGCGCGCTAATGGGGAGGACAAGAACGTGTTGTTGCAGAA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU436816 lncRNA downstream 209652 3755718 ~ 3755924 (-) True G382094
TU436815 lncRNA downstream 213575 3751722 ~ 3752001 (-) True G382093
TU436752 lncRNA downstream 253124 3712227 ~ 3712452 (-) True G382036
TU436680 lncRNA downstream 267879 3696886 ~ 3697697 (-) True G381978
TU436711 lncRNA downstream 278297 3638729 ~ 3687279 (-) True G382003
TU436770 lncRNA upstream 63604 4040541 ~ 4044999 (-) True G382051
TU436858 lncRNA upstream 68300 4045237 ~ 4045696 (-) True G382132
TU436859 lncRNA upstream 70326 4047263 ~ 4047563 (-) True G382133
TU436860 lncRNA upstream 71012 4047949 ~ 4048367 (-) True G382134
TU436861 lncRNA upstream 71948 4048885 ~ 4049228 (-) True G382135
CI01000189_03950993_03958722.mRNA mRNA downstream 6854 3950173 ~ 3958722 (-) True CI01000189_03950993_03958722
CI01000189_03903426_03904603.mRNA mRNA downstream 60973 3902934 ~ 3904603 (-) True CI01000189_03903426_03904603
CI01000189_03699588_03706531.mRNA mRNA downstream 258742 3699248 ~ 3706834 (-) True CI01000189_03699588_03706531
CI01000189_03608917_03613975.mRNA mRNA downstream 351601 3608235 ~ 3613975 (-) True CI01000189_03608917_03613975
CI01000189_03557950_03558676.mRNA mRNA downstream 406900 3557808 ~ 3558676 (-) True CI01000189_03557950_03558676
CI01000189_03980640_03981210.mRNA mRNA upstream 3676 3980613 ~ 3981210 (-) True CI01000189_03980640_03981210
CI01000189_03983572_04013988.mRNA mRNA upstream 5429 3982366 ~ 4014133 (-) True CI01000189_03983572_04013988
CI01000189_04017195_04030340.mRNA mRNA upstream 40084 4017021 ~ 4030340 (-) True CI01000189_04017195_04030340
CI01000189_04058639_04097730.mRNA mRNA upstream 80989 4057926 ~ 4097730 (-) True CI01000189_04058639_04097730
CI01000189_04120947_04130707.mRNA mRNA upstream 143400 4120337 ~ 4130707 (-) True CI01000189_04120947_04130707
TU436773 other downstream 72667 3885562 ~ 3892909 (-) True G382052
TU436781 other downstream 132963 3830627 ~ 3832613 (-) True G382060
TU435927 other downstream 959132 2998873 ~ 3006444 (-) True G381317
TU435899 other downstream 1002122 2959108 ~ 2961667 (-) True G381299
TU434639 other downstream 3067136 894220 ~ 898440 (-) True G380177
TU436879 other upstream 168653 4145590 ~ 4146084 (-) True G382153

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00022884 True 2389 mRNA 0.48 3 NC_007128.7 26803470 ~ 26813630 (+)
striped catfish (Pangasianodon hypophthalmus) TU189595 True 1509 lncRNA 0.37 2 NC_047604.1 5949126 ~ 5951803 (-)