CI01000203_00138806_00154529 (KCNJ9, KCNJ6)


Basic Information

Item Value
gene id CI01000203_00138806_00154529
gene name KCNJ9, KCNJ6
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000203
NCBI id null
chromosome length 933177
location 138561 ~ 154554 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000203_00138806_00154529.mRNA
CGTTATATTAGTCCCAGTGAGAGTCATGGATACACAGACGGCACTTTTCCTGAGAATAATAACCGGGTGTTTCTGGTGTTTCACACTCACTGGATCTGTGAGGTCAGAGTTCAGCTCATCTGGTGTCGTTCTGTGCGTGTCAAGCTTCCAGGGACAAATGCTTCAGGAACGCTGGTGTGAAGTGACTGACGACACCAGAATTAGTCTTCAGAGACTGTCCGTCTTTCTGCCTGTGTGTCTGTTTCTGAAGGCTCAGAACCTTCCAGAAGTCCAGATGGAGCAGGATGTCGAGAGCACGGTCACGGTCCGACAGCCCAAGCAGCCGCGGGACTACGTCCCCAAACCGCTGCAGGACAGGGAGCGCGCCAAGCAAAAGATCCAGCGCTACGTCCGCAAAGATGGCAAATGCAACGTGCACCACGGAAACGTGCGGGAGACCTACCGTTACCTGACGGACATCTTCACCACGCTGGTGGACCTCAAGTGGAGGTTCAACCTGTTCATCTTCGTTCTGGTTTACACCGTGACGTGGCTGTTCTTTGGCTTCATGTGGTGGCTGATCGCGTACGTACGAGGAGATCTGGAGCACATAGGCGACAGCCAGTGGACTCCTTGCGTCAATAACCTCAACGGCTTTGTCTCCGCGTTCTTATTCTCCATAGAGACGGAGACCACCATCGGCTACGGCTACAGGGTGATCACCGACAAGTGCCCCGAGGGCATTGTGCTGCTGCTGGTGCAGTCGGTGTTGGGCTCCATTGTCAACGCCTTCATGGTGGGCTGCATGTTCGTGAAGATCTCGCAGCCCAAGAAGCGCGCAGAGACTCTGGTGTTCTCCACCAACGCTGTCATCTCCGTGCGTGACGGCCGGCTGTGTCTGATGTTCCGTGTGGGAGACCTGCGGAACTCGCACATCGTGGAGGCGTCCATTAGAGCCAAACTGATCAAGTCCAAACAGACCAAGGAGGGAGAGTTCATCCCTCTCAATCAGACGGACATGAACGTGGGCTACGACACTGGAGACGACCGGCTCTTCCTGGTGTCTCCACTCATCATCTGCCATGAGATCAATCAGCACAGCCCCTTCTGGGAGATCTCCAAAGAGCACCTGGCCCACGAGGAGCTGGAGATCGTGGTGATCCTGGAGGGCATGGTGGAGGCCACAGGAATGACGTGTCAGGCGCGCAGCTCGTACGTGGCCAGCGAGATCAAGTGGGGCTACCGCTTCACACCCGTCCTGACGCTGGAGGACGGCTTCTACGAGGTCGACTACAACAGCTTCCACGAGATCTACGAGACCAACACCCCCAGCTGCAGCGCGCGAGAGCTGGCGGAGATGGCGGCGCGCTCCCGTCTGCCGCTCAGCTGGTCGGTGGCCAGTAAACTGAGTCAGCTGGACTCGCAGGAGGAGAAGAGCGGCGGCGCTGAGAGGAACGGAGACGTGGCCAACATGGAGAACGAGTCGAAAGTGTAGGAGGACACGGGAATCTCTCCTCGCCTCTGTGCCGCCGGACGTTTGGCTGAGGTCAGAGGTCAGAGGTCAGCTCAGGAACGCGCCCCGAGGCGGGCCAAGGATACGGACCCACCATCTCACGCGCTTCTCTCTCTTTCTCGCCCCGCGGGACAGGCGAACTCGCGCGGGTGACTGCATGGTTCCCGAAACCTTTTTTTCTTAAAGATAAGAAATGATATTTTCAGATTTGTAATTCAAAGATTAAA

Function

symbol description
kcnj6 Human ortholog(s) of this gene implicated in alcohol use disorder and heroin dependence. Orthologous to human KCNJ6 (potassium inwardly rectifying channel subfamily J member 6).
kcnj9 Predicted to enable inward rectifier potassium channel activity. Predicted to be involved in potassium ion import across plasma membrane and regulation of ion transmembrane transport. Predicted to act upstream of or within potassium ion transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Orthologous to human KCNJ9 (potassium inwardly rectifying channel subfamily J member 9).

GO: NA

KEGG:

id description
K05000 KCNJ6, KIR3.2; potassium inwardly-rectifying channel subfamily J member 6

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000203_00138806_00154529.mRNA True 1719 mRNA 0.57 4 138561 154554

Neighbor

gene id symbol gene type direction distance location
CI01000203_00132981_00136502 NA coding downstream 49 130881 ~ 138512 (-)
CI01000203_00118686_00131344 NA coding downstream 7217 118686 ~ 131344 (-)
CI01000203_00103997_00118416 TTC3 coding downstream 20145 103867 ~ 118416 (-)
CI01000203_00086596_00095920 DYRK1A, DYRK1AA coding downstream 42389 84952 ~ 96172 (-)
CI01000203_00069971_00082234 NA coding downstream 55083 69479 ~ 83478 (-)
CI01000203_00184424_00196181 ERG coding upstream 29728 184282 ~ 199866 (-)
CI01000203_00205967_00209724 NA coding upstream 51342 205896 ~ 212692 (-)
CI01000203_00229325_00233430 NA coding upstream 74742 229296 ~ 234414 (-)
CI01000203_00237223_00242867 NA coding upstream 82354 236908 ~ 243584 (-)
CI01000203_00270385_00283030 EMSY coding upstream 114607 269161 ~ 283030 (-)
G388460 NA non-coding downstream 4336 134047 ~ 134104 (-)
G388456 NA non-coding downstream 118846 17196 ~ 19715 (-)
G388469 NA non-coding upstream 837 155391 ~ 180464 (-)
G388467 NA non-coding upstream 14636 169190 ~ 262632 (-)
G388470 NA non-coding upstream 72172 226726 ~ 227497 (-)
CI01000203_00294049_00335783 AKT2, AKT2L non-coding upstream 149083 293775 ~ 335783 (-)
G388500 NA non-coding upstream 184256 338810 ~ 339163 (-)
G388477 NA other upstream 16609 171163 ~ 172264 (-)
G388454 NA other upstream 62235 216789 ~ 218925 (-)
CI01000203_00287087_00290157 NHLRC3 other upstream 131158 285712 ~ 290157 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_002478 KCNJ6 coding NC_007121.7 CM002894.2 124995 ~ 135432 (-)
bowfin (Amia calva) AMCG00004483 kcnj5,LOC107725067,LOC107709561,LOC107558569,LOC106581095 coding CM030121.1 CM030121.1 50815722 ~ 50838107 (-)