XLOC_012111 (aftphb)


Basic Information

Item Value
gene id XLOC_012111
gene name aftphb
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 24569988 ~ 24587686 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00023868
tgTCTCCTCTTCTCAGGGAATGCTGGAACCCACCAAAGAGTCTCAAAAATCTCCAGCCTCCCCTGCACTTTGCCCTTCTGCTCCTCTGGAGAGTGGAAATATTCTATGCACTCAGGTGGCGCCCTCACTGGCCATTAGTATTGACGGTGTTGATCCAGAGATATATGAACTGACTACAGCTAAAATGGAGAACAACACCACTGGTCGCAACATTGCAGATGCATTTACAAAACTTATGGAGTCTATAGAGAAAACCAAACCAACAGTCAGGAAACCAGAAACAGATGAAGAGATGAGCGAAGAAGCAGCAAAGGTCATCTCACTTCTCCCTGACCTGTCTTTCATGAAGGCCAGGGTTTTAATGTTCCCCTCCATTTTAacgccagcagccaatcacacaTAACCAATAAGCTTCGAGTTCAAAGTCATTGCATGGTCATTCATTGTTTATCGACAGCTACAGAGAACAAATCAAGTTATTCTTTCTTCCAAACAAAAGAAGACCTTTAATATAACAAGCTAATCATTTGAAAGCTGCCTATTTATTGACTTCTGCAGTTCCCACTATATGTGAAAATATTCAATCTGGGTTTGTTTTGTTCTCAGCAAAAGGGACACGCGGctttcatattttatatacagtatttagaCCAGCATATTAACcttttattattgcttattatgattttattttagagtgcTGTTTGTGAAAATGTGAGTACTTTTCATTTAGAGGTGAAATGCAGAATTGCACATTTTACTACTTGaaaccagacacacacacacacacacttttcttttaatttctttgtatttttagaATGTCATTAAGTTCAGTTCTTCctttaattgattc
>TCONS_00023869
GGAACACCGGATGAGCGCAGGAACTGGCTGTGAGAGCCGGTGTAACTTTACCTGGACGAGACGAGACGGGACTTGTCCTCTCACTGAAGTTTCAGTGTCTGTCATGATGATCGTCCGTAGCGGATAGGAAAAGgggtgtgtgtgcatgtggccGCGGGTGGTGGAAGTGGACCATGGAGCCTGATGTCGTCCGTCTGTACTCTTCCTCTCCACCACCTCTAGATGAGACTGgagaggaagaagaggaagatGAGTTTGGTGAGTTCGGGGGTTTTGACGGAGGAGGAGTGTCGTCCAGTTTTAGCTTGTCTGAGCTTGACACGCCCACAACATatgaccaatcaaatgcactGGAGGACTCCCCACCTGACCTGATCATCAAATGCACACAGAATATCATCGTTTCTGAAAACAATGGATGGACGAATGAGAAGGAGAGAGAAACTGAATCAATCAGCAGCTTTGGAATAGCTGAGAAGGAATCATCAGGGATTCTTACAAATGGCATGACATCCTCTGACCTACAGGTGGAGCTTTCAGATAGATCTGACCAGAACTCCCCCTCTATGGGCAGTGATGTCCAAAATAGCAGCACAGGTGATGAGCACAGTCTCAGTAATGGCTACAGTGAGTCTTGTTCAAATTCAGACCTGGACCAGTCTCTTCATAACTGCTTACAAAGCACACACATTGAGGTAAATTATGGACGGGATGCCAGTATAGCTGATGTTTTAGACAGAAGCCGCATAACAGACAAGCTGCCAGACTCGAACAATCACTCATCTTGTACTGAAGCATGTGAACTCAGAGACACAGAAGCAGGGCTGGAGATATGTGGCAACTCCCAGTTTCTTTCTTCCTGTAGAGATGCACAAGAGGTTGAAGGTGAGCAGGATCAAAGCGAGAACTGTTTTGCCGCAGACTGTCTAGATGAGTCTATGGACCATGTTGACAAAGCTGAAGCTGAAACTGTTTCCTCAGTGGATGCGGATCTAATCTCTGACATGCAGCTGAGTGGAGACACAATAGAAATTCATGGATCATTTGCAAACTCAGAGGTGGGAATAGATGCTGAAGTTGAGACATCTGCAGACCCCACAGCTGACGAGGATTTCTGCGACTTCAGAGATGCAACTCAGGGTTTCACAGACTTCAGTCGGACTGAATCTATGACCCAGGAAGGGCTTCCTGAATTTGTGACGGCCATGTCCAGGTGCTCCACAGACGATGATTTTGGTGACACTGACACCCTAAAAGACTTCAAGGAGGAAGATGAGCTGGCTGAGGAAATGACCGGTGAAGAAGGAGGCTTTTGCTCTGAGTTGCCTCCTAGTGACAGTTTTGCAGACTTTAGTTCAGCTCCATTTGAAGGTGCAGCAGGGGGAGAAGACGACGGTTGGGCTGCATTTGCTCCACGTGAAAGCCCAAAAGGGGATCAGGATTCATGGGCCACATTTGGAGAGGAACAGAGCACTTATGCCGGTAAAGAAGAACAAGATGTTGAGACTTCATCAGCGCCCTCTAGGGAAGACATCCAGAGTAGCACTGTTGATTTCAGCTGCAAAATACAGCATCTCTTCAAAACCGCCTTCCCTTTAGATGTCCATGCTGAGGTCAGCGAGGTTACTGAGGTCTTGCCTCTTCATAAATTCCTGCCGGCTCAGGATCCTCAGGAGCAAAGGGATCCAAGCAGCTCCTTTTTTGCACAGGAAAATGCATTGGTCATGTGGCGCCACCTTCAGGACATTCTCGGCAGTCATGGCCTTAAGTTTAAGTGGGCAGGTTCCCATAGCAACAGAATTCTTCTGAATTGCCTAGGAATCAGGAATATTTTGTTCACTGGAGACAAGAACCAACCACTGATCGTGCCTATGTTTGCTGCCGGACTTGGAATGCTGGAACCCACCAAAGAGTCTCAAAAATCTCCAGCCTCCCCTGCACTTTGCCCTTCTGCTCCTCTGGAGAGTGGAAATATTCTATGCACTCAGGTGGCGCCCTCACTGGCCATTAGTATTGACGCTCAAGATGAAGGAATCTCCAAATTAAATTTGGACTATTTTGGACCTGTGGATGAATGTAGCTCAGATAGTGAAACTGACACTCCACTACCAGGTGTTGATCCAGAGATATATGAACTGACTACAGCTAAAATGGAGAACAACACCACTGGTCGCAACATTGCAGATGCATTTACAAAACTTATGGAGTCTATAGAGAAAACCAAACCAACAGTCAGGAAACCAGAAACAGATGAAGAGATGAGCGAAGAAGCAGCAAAGGTCATCTCACTTCTCCCTGACCTGTCTTTCATGAAGGCCAGGGTTTTAATGTTCCCCTCCATTTTAacgccagcagccaatcacacaTAACCAATAAGCTTCGAGTTCAAAGTCATTGCATGGTCATTCATTGTTTATCGACAGCTACAGAGAACAAATCAAGTTATTCTTTCTTCCAAACAAAAGAAGACCTTTAATATAACAAGCTAATCATTTGAAAGCTGCCTATTTATTGACTTCTGCAGTTCCCACTATATGTGAAAATATTCAATCTGGGTTTGTTTTGTTCTCAGCAAAAGGGACACGCGGctttcatattttatatacagtatttagaCCAGCATATTAACcttttattattgcttattatgattttattttagagtgcTGTTTGTGAAAATGTGAGTACTTTTCATTTAGAGGTGAAATGCAGAATTGCACATTTTACTACTTGaaaccagacacacacacacacacacttttcttttaatttctttgtatttttagaATGTCATTAAGTTCAGTTCTTCctttaattgattc
>TCONS_00023870
GAAAGGCTTCGTCTAATTGAAGTGACTGGTGTGCAGTGaaaccttcttttttttttactttccccTTATATCTGTTATTTCGAAATCAATCTTTGGTAAGCTTATCGTCTCTAGCATTTCTTCATAGTCTAGCATTCTGTCCCTGATTTCCACTCTCTGGACTTTACTACAGTACTGCCTCTGTGAGTATCTCTGCTTTTCTTCCTTTAATCTCATGTTTTAGTGATTCTCTTTGTTTTCTACATCATCTCTAAGATCATGTCATCCTACTTTCAACCATCTTAACTTTCATTTATATATGTTAAAAAGAGATTTTCTGTTCATGTAGGTGTTGATCCAGAGATATATGAACTGACTACAGCTAAAATGGAGAACAACACCACTGGTCGCAACATTGCAGATGCATTTACAAAACTTATGGAGTCTATAGAGAAAACCAAACCAACAGTCAGGAAACCAGAAACAGATGAAGAGATGAGCGAAGAAGCAGCAAAGGTCATCTCACTTCTCCCTGACCTGTCTTTCATGAAGGCCAGGGTTTTAATGTTCCCCTCCATTTTAacgccagcagccaatcacacaTAACCAATAAGCTTCGAGTTCAAAGTCATTGCATGGTCATTCATTGTTTATCGACAGCTACAGAGAACAAATCAAGTTATTCTTTCT

Function

symbol description
aftphb Predicted to enable clathrin binding activity. Acts upstream of or within cilium movement. Located in cytoplasm. Orthologous to human AFTPH (aftiphilin).

GO:

id name namespace
GO:0003341 cilium movement biological_process
GO:0046907 intracellular transport biological_process
GO:0032588 trans-Golgi network membrane cellular_component
GO:0030121 AP-1 adaptor complex cellular_component
GO:0005737 cytoplasm cellular_component
GO:0030276 clathrin binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060503-388 Predicted to enable clathrin binding activity. Acts upstream of or within cilium movement. Located in cytoplasm. Orthologous to human AFTPH (aftiphilin).

Ensembl:

ensembl_id ENSDARG00000071347

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00023868 False 856 mRNA 0.39 4 24569988 24575893
TCONS_00023869 False 2822 mRNA 0.45 10 24569988 24587686
TCONS_00023870 True 669 lncRNA 0.38 2 24570357 24571175

Neighbor

gene id symbol gene type direction distance location
XLOC_012110 abch1 coding downstream 5311 24537185 ~ 24564677 (-)
XLOC_012109 peli1b coding downstream 48606 24479880 ~ 24521382 (-)
XLOC_012108 wdpcp coding downstream 130316 24331048 ~ 24439672 (-)
XLOC_012107 NA coding downstream 251417 24307366 ~ 24318571 (-)
XLOC_012106 NA coding downstream 268299 24296350 ~ 24301689 (-)
XLOC_012112 CR352220.2 coding upstream 1148 24588834 ~ 24631981 (-)
XLOC_012113 NA coding upstream 14947 24602633 ~ 24603925 (-)
XLOC_012114 arhgef33 coding upstream 80842 24668528 ~ 24680965 (-)
XLOC_012115 morn2 coding upstream 93594 24681280 ~ 24684687 (-)
XLOC_012116 si:ch211-15d5.11 coding upstream 107908 24695594 ~ 24717927 (-)
XLOC_012105 NA non-coding downstream 350306 24203699 ~ 24219682 (-)
XLOC_012104 NA non-coding downstream 543131 24023307 ~ 24026857 (-)
XLOC_012103 NA non-coding downstream 582478 23985873 ~ 23987510 (-)
XLOC_012123 NA non-coding upstream 600925 25188611 ~ 25197601 (-)
XLOC_012124 NA non-coding upstream 656752 25244438 ~ 25246610 (-)
XLOC_012130 NA non-coding upstream 925238 25512924 ~ 25522751 (-)
XLOC_012132 NA non-coding upstream 997801 25585487 ~ 25586858 (-)
XLOC_012133 si:ch211-214p16.2 non-coding upstream 999939 25587625 ~ 25588430 (-)

Expression


Co-expression Network