Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00023868 |
| length | 856 |
| RNA type | mRNA |
| GC content | 0.39 |
| exon number | 4 |
| gene id | XLOC_012111 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007128.7 |
| NCBI id | CM002901.2 |
| chromosome length | 53461100 |
| location | 24569988 ~ 24587686 (-) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0003341 | cilium movement | biological_process |
| GO:0046907 | intracellular transport | biological_process |
| GO:0032588 | trans-Golgi network membrane | cellular_component |
| GO:0030121 | AP-1 adaptor complex | cellular_component |
| GO:0005737 | cytoplasm | cellular_component |
| GO:0030276 | clathrin binding | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-060503-388 | Predicted to enable clathrin binding activity. Acts upstream of or within cilium movement. Located in cytoplasm. Orthologous to human AFTPH (aftiphilin). |
| ensembl_id | ENSDART00000141914 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00024904 | lncRNA | downstream | 251417 | 24307366 ~ 24318571 (-) | True | XLOC_012107 |
| TCONS_00023860 | lncRNA | downstream | 251419 | 24307366 ~ 24318569 (-) | False | XLOC_012107 |
| TCONS_00023861 | lncRNA | downstream | 251420 | 24307366 ~ 24318568 (-) | False | XLOC_012107 |
| TCONS_00024903 | lncRNA | downstream | 251427 | 24307366 ~ 24318561 (-) | False | XLOC_012107 |
| TCONS_00024902 | lncRNA | downstream | 252830 | 24307366 ~ 24317158 (-) | False | XLOC_012107 |
| TCONS_00023878 | lncRNA | upstream | 124739 | 24700632 ~ 24703778 (-) | False | XLOC_012116 |
| TCONS_00024905 | lncRNA | upstream | 124739 | 24700632 ~ 24717927 (-) | False | XLOC_012116 |
| TCONS_00023899 | lncRNA | upstream | 612718 | 25188611 ~ 25191072 (-) | False | XLOC_012123 |
| TCONS_00023901 | lncRNA | upstream | 612718 | 25188611 ~ 25197601 (-) | False | XLOC_012123 |
| TCONS_00023900 | lncRNA | upstream | 612718 | 25188611 ~ 25197601 (-) | True | XLOC_012123 |
| TCONS_00023866 | mRNA | downstream | 5311 | 24537185 ~ 24564677 (-) | False | XLOC_012110 |
| TCONS_00023867 | mRNA | downstream | 5314 | 24537468 ~ 24564674 (-) | True | XLOC_012110 |
| TCONS_00023865 | mRNA | downstream | 48606 | 24479880 ~ 24521382 (-) | True | XLOC_012109 |
| TCONS_00023862 | mRNA | downstream | 130316 | 24331048 ~ 24439672 (-) | False | XLOC_012108 |
| TCONS_00023863 | mRNA | downstream | 205461 | 24349565 ~ 24364527 (-) | False | XLOC_012108 |
| TCONS_00023872 | mRNA | upstream | 12941 | 24588834 ~ 24631981 (-) | False | XLOC_012112 |
| TCONS_00023871 | mRNA | upstream | 12941 | 24588834 ~ 24631981 (-) | True | XLOC_012112 |
| TCONS_00023873 | mRNA | upstream | 26740 | 24602633 ~ 24603925 (-) | False | XLOC_012113 |
| TCONS_00023874 | mRNA | upstream | 26829 | 24602722 ~ 24603752 (-) | True | XLOC_012113 |
| TCONS_00023875 | mRNA | upstream | 92635 | 24668528 ~ 24680965 (-) | True | XLOC_012114 |
| TCONS_00023856 | other | downstream | 903510 | 23663211 ~ 23666478 (-) | True | XLOC_012099 |
| TCONS_00023840 | other | downstream | 1644651 | 22925209 ~ 22925337 (-) | True | XLOC_012088 |
| TCONS_00023839 | other | downstream | 1783697 | 22786174 ~ 22786291 (-) | True | XLOC_012087 |
| TCONS_00023820 | other | downstream | 2559320 | 22002857 ~ 22010668 (-) | False | XLOC_012077 |
| TCONS_00023811 | other | downstream | 2710824 | 21833724 ~ 21859164 (-) | False | XLOC_012072 |
| TCONS_00023885 | other | upstream | 287818 | 24863711 ~ 24866653 (-) | True | XLOC_012119 |
| TCONS_00023894 | other | upstream | 341457 | 24917350 ~ 24937879 (-) | False | XLOC_012122 |
| TCONS_00023896 | other | upstream | 353250 | 24929143 ~ 24937535 (-) | False | XLOC_012122 |
| TCONS_00023897 | other | upstream | 356798 | 24932691 ~ 24937684 (-) | False | XLOC_012122 |
| TCONS_00023912 | other | upstream | 937031 | 25512924 ~ 25522751 (-) | True | XLOC_012130 |
