XLOC_012072 (cuzd1.2)


Basic Information

Item Value
gene id XLOC_012072
gene name cuzd1.2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 21833719 ~ 21859164 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00023810
TATGAAATATGGAAGCTCTCACTCTCCTTCTTTGTTTGCTTCTAACTACTAAGGCCTCTCTGGAACCGTGTGGAGGATCCTTGAGTAGCTGGATGGGTGAATTTACTAGCCCCAATTACCCTAATAGTTACCCTGATAAAGCACGGTGCACATGGACCATTCACAGCACAGGGGCGGCAACTGTGTCACTGACCTTCACAGATGTTTTTCTGGAATCATGCTGCGATTACATCAGAGTGTACAATGGTCCTTCTACCCTCTACCCTTTACTGGGAGAACTAGTGGACGAGAAGAGCAAAAGCTACAACTCCAGTGGCAATGATCTGACCGTGCTTTTCTTTAGTGATGACGAAATATCCAGAAGAGGATTTCATGCAAACTGGGTTTTTTTAGATTCTAATTCATGCAGAAACTACTGTGGATTCAGCTTTGGCACTTGTTCATGTGACGACTCCTGTCAGGATAATAGAAACTGTTGCTTTGACTACAACAGCTACTGCTTCCAAACAACAACATGGCCAACCACAACAGATATCCCCTCCTGCATGTATAACTGTGGATACAACCCCGGCAGCTGTTCATGTACTGACTTCTGTCAGCGTGATGGCAACTGTTGCCCTGACTATGAAGCCTACTGttcagaaacaacaacaacaacagcttttGAACCAGATACAACAGAAATCCTTTCTTGCATGTATAATTGTGGATACAACCTCGGCGGCTGCTCATGTACCGAATTCTGTCGGAGTTATGGCAACTGTTGCCCTGACTATGAAGCCTACTGttcagaaacaacaacaacaacttttgaACCAGATACAACAGCTCATTCCTGCATGTACAACTGTGGATATGACTTGGGCAGCTGCTCCTGCGCCAGAGACTGTCATTACTATGACATCTGCTGTCCAGACTATGACAGCCATTGTCCATCGTACACAACACTGAGAGACTCAACGACAGAATTACATTATACAGAATCTCACCCTAAGTGTGGAGGACATCTGTATGGTGCTGGGTTGTTTTCCACTCCAAACTACCCAAGCTATTATCATGACAACGCCTACTGTGTGTGGTATCTTTCTGCTCAGCAAGGACAGAGGATCTTCTTGACATTTGCTGATGTGCAACTGGAGCGCTGCTGTGACTGTGACTACATTACCATTCATGACGGCTCTTCCACTGGTTATCCACAGCTGGGAAATGTCTGCTTCAATGACACCACACATCAGGCATTTCACTCTACTTCACGATACTTGACTGTTGTCTTCAGGAGTGACTTTTCTGGTGTTAGCCATGGGTTCAAGGCCCATTTCACCAGCTCTCTGACTGCAGATCAAGGCCGTGTGGATTGTTCCTCCGACAACATGGTCATTGTTCTTCGAAGGTCTTATCTGAACTCACTGGGATTTAGTGGAAACGACCTTTATGTGGATGACCGTCTCTGCAGACCAAACATTAGCAGCACTGAAGTTGTGTTCAGATTCCCCCTCAACACATGTGGAACCGCCAAAAAGATGATGAACAGTTTTGTGTCCTACACCAACAATGTGCGGGCATCTCCTTCTCAGTCGGGTGTAATCACTCGTCAGTCAGAGTTTCTCCTGAGTGTGGGCTGCCGAATGGAGCCGGACACTATTGTGCAGATCTTCTACAAGGCCGAAGAAATCCCCAATGGCAACATCACAGGAACGGGCCGCTTCAATGCCAGCATTGCCTTCTACACCTCCAGAAAGTTCAACCAGCAGATTTACGACTCTCCATATGAAGTGTACCTGAATGACGATCTGTTTGTTCAAGTCAAGCTAACCAGATTTGATGCAAGCCTGGATCTCTTCTTGGAGACTTGCGTAGCATCTCCAAATCCAAATGACTTTAAAGATTATTCCTATGACCTGCTGCGTAATGGATGTCCCAGAGACAGCACATTTCAATCCTATATCAATGGCGTGGATCAATATGCTCAGTTCAGTTTCCGGGCTTTCAAGTTCCTCCAGACTCATGCCTATGTGCACCTGCAGTGTCAGGTGATCATCTGCCCTGATAATGATTACAACTCTCGCTGCCGTAAAGGTTGCCAATACCGGCGCAAGAGATCCCTTGACAGCTCCTACAACACCAGTACTGTGACGCTGGGCCCGATCAAACTCAGAGGTCAGTGATCAGACAGCTGTTCAGACAACAAGAGAAGATTAAGGCAGCAGAGTGGTTTTTATCATCATCAGCAACTTTATTTCTCATCTCTATGATTAATTAGACCACATCATCCTACCTAATGATGTACCTTCTTTAATTCATTAAAGCAATCCTTCTTCCAAAGC
>TCONS_00023811
GATCCCTTGACAGCTCCTACAACACCAGTACTGTGACGCTGGGCCCGATCAAACTCAGAGGTCAGTGATCAGACAGCTGTTCAGACAACAAGAGAAGATTAAGGCAGCAGAGTGGTTTTTATCATCATCAGCAACTTTATTTCTCATCTCTATGATTAATTAGACCACATCATCCTACCTAATGATGTACCTTCTTTAATTCATTAAAGCAATCCTTCTTCC
>TCONS_00023812
GTGTGATCTATGTGTCTCGACAGCTTCTCATCAGCTTTTAATACTTAAATTTGCTTTGTCAGTTTGATAAATGTGTGCGTTGTTGAGAGCCGTGTTTGCCACACAACATCACCCACTCTCCGTCTCTCTTTCCCTTTAGATGATGAACAGTTTTGTGTCCTACACCAACAATGTGCGGGCATCTCCTTCTCAGTCGGGTGTAATCACTCGTCAGTCAGAGTTTCTCCTGAGTGTGGGCTGCCGAATGGAGCCGGACACTATTGTGCAGATCTTCTACAAGGCCGAAGAAATCCCCAATGGCAACATCACAGGAACGGGCCGCTTCAATGCCAGCATTGCCTTCTACACCTCCAGAAAGTTCAACCAGCAGATTTACGACTCTCCATATGAAGTGTACCTGAATGACGATCTGTTTGTTCAAGTCAAGCTAACCAGATTTGATGCAAGCCTGGATCTCTTCTTGGAGACTTGCGTAGCATCTCCAAATCCAAATGACTTTAAAGATTATTCCTATGACCTGCTGCGTAATGGATGTCCCAGAGACAGCACATTTCAATCCTATATCAATGGCGTGGATCAATATGCTCAGTTCAGTTTCCGGGCTTTCAAGTTCCTCCAGACTCATGCCTATGTGCACCTGCAGTGTCAGGTGATCATCTGCCCTGATAATGATTACAACTCTCGCTGCCGTAAAGGTTGCCAATACCGGCGCAAGAGATCCCTTGACAGCTCCTACAACACCAGTACTGTGACGCTGGGCCCGATCAAACTCAGAGGTCAGTGATCAGACAGCTGTTCAGACAACAAGAGAAGATTAAGGCAGCAGAGTGGTTTTTATCATCATCAGCAACTTTATTTCTCATCTCTATGATTAATTAGACCACATCATCCTACCTAATGATGTACCTTCTTTAATTCATTAAAGCAA
>TCONS_00023813
AATATGGAAGCTCTCACTCTCCTTCTTTGTTTGCTTCTAACTACTAAGGCCTCTCTGGGTAAGAATctaattgtctgtctgtctgtctgaacaATTTTATACATATTGTATTGTCTTGTTGCCCTCTTGTTTTTCCATCACATTCAGAACCGTGTGGAGGATCCTTGAGTAGCTGGATGGGTGAATTTACTAGCCCCAATTACCCTAATAGTTACCCTGATAAAGCACGGTGCACATGGACCATTCACAGCACAGGGGCGGCAACTGTGTCACTGACCTTCACAGATGTTTTTCTGGAATCATGCTGCGATTACATCAGAGTGTACAATGGTCCTTCTACCCTCTACCCTTTACTGGGAGAACTAGTGGACGAGAAGAGCAAAAGCTACAACTCCAGTGGCAATGATCTGACCGTGCTTTTCTTTAGTGATGACGAAATATCCAGAAGAGGATTTCATGCAAACTGGGTTTTTTTAGATTCTAATTCATGCAGAAACTACTGTGGATTCAGCTTTGGCACTTGTTCATGTGACGACTCCTGTCAGGATAATAGAAACTGTTGCTTTGACTACAACAGCTACTGCTTCCAAACAACAACATGGCCAACCACAACAGATATCCCCTCCTGCATGTATAACTGTGGATACAACCCCGGCAGCTGTTCATGTACTGACTTCTGTCAGCGTGATGGCAACTGTTGCCCTGACTATGAAG

Function

symbol description
cuzd1.2 Orthologous to human CUZD1 (CUB and zona pellucida like domains 1).

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-131119-30 Orthologous to human CUZD1 (CUB and zona pellucida like domains 1).

Ensembl:

ensembl_id ENSDARG00000025311

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00023810 False 2324 mRNA 0.46 17 21833719 21842135
TCONS_00023811 False 222 processed_transcript 0.41 2 21833724 21859164
TCONS_00023812 False 928 lncRNA 0.45 3 21833734 21835452
TCONS_00023813 True 714 lncRNA 0.44 5 21839629 21842130

Neighbor

gene id symbol gene type direction distance location
XLOC_012071 si:ch211-208g24.8 coding downstream 1529 21826825 ~ 21832190 (-)
XLOC_012070 hmx3a coding downstream 40606 21790606 ~ 21793113 (-)
XLOC_012069 hmx2 coding downstream 49567 21782043 ~ 21784152 (-)
XLOC_012068 gpr26 coding downstream 216101 21607239 ~ 21617618 (-)
XLOC_012067 vax1 coding downstream 391440 21432693 ~ 21442279 (-)
XLOC_012073 NA coding upstream 4491 21863655 ~ 21864182 (-)
XLOC_012074 cuzd1.1 coding upstream 10880 21870044 ~ 21884323 (-)
XLOC_012075 slc22a7b.3 coding upstream 123453 21982617 ~ 21993707 (-)
XLOC_012076 slc22a7b.2 coding upstream 134879 21994043 ~ 22001935 (-)
XLOC_012077 slc22a7b.1 coding upstream 143693 22002857 ~ 22010668 (-)
XLOC_012063 NA non-coding downstream 613240 21213422 ~ 21220479 (-)
XLOC_012061 AL929290.1 non-coding downstream 703342 21130261 ~ 21130377 (-)
XLOC_012055 NA non-coding downstream 910191 20900590 ~ 20923528 (-)
XLOC_012054 BX927186.1 non-coding downstream 1130422 20703179 ~ 20703297 (-)
XLOC_012051 NA non-coding downstream 1159828 20670398 ~ 20673891 (-)
XLOC_012082 NA non-coding upstream 625641 22484805 ~ 22504384 (-)
XLOC_012083 BX511218.1 non-coding upstream 662472 22521636 ~ 22525745 (-)
XLOC_012086 NA non-coding upstream 828006 22687170 ~ 22689787 (-)
XLOC_012087 BX548077.1 non-coding upstream 927010 22786174 ~ 22786291 (-)

Expression


Co-expression Network