RNA id: TCONS_00024902


Basic Information

Item Value
RNA id TCONS_00024902
length 4258
lncRNA type antisense_over
GC content 0.41
exon number 2
gene id XLOC_012107
representative False

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 24307366 ~ 24318571 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TGCTGGTTTACTCTGGGCCCCGATGTTGCTAAGACCCCGTGATAAACCCAGAACAAGTATCAAGTTATCAGGTTGCAAGAAGCTTTTGTAATAAGAGTATTTTGTCTAATCCCAAATTGCAGTCGAATTTTCTAAATGCTGAGCTCGTAAATCTTGGGATTAGAGGAGGCGAGAAGAGGAGGGGGAAAAGTTTGGTTTCTTTAGCCGGCAGGATGGGAGCGGGTCGGCGATGTTGTCGGTCCTTATTAAAACGATGATGCATAAAATTCGATATTGAAGCTCACGCAGAAGGCTCGGTACCGGCGTATTTTACCACGAAGGAAGGATTTTCGGCGGTCGAAGGGCTTTGGTGAAGTCGAACTGTTCAGCACCTGAAGTCAGGCCGTGGACTTCAAAGCAAGAGCCACAGATCGCGCTTCTCCGCCCGCGCTGAGATGCTCCACTTCTCTTTGCCACGCCGTTTGGAGAGTTTTATTATGTGATAAACAATCTATTTAAAAGAAGTCACTTTTTACCActactggtttaagctggaaaaCAATAGTTGGCAACAAAAAGAACAACAATCAGGCCGGCCTGTTTATCCTGCACAGTTCTCTATACGTTGCATGTCATTCACGAGCCTCCTCTATAATTCGCTCTGTCGTTTCTGCAACCCCTCCGTCAAGAACCACAATGCCCACTTCACAAAGCCCTGCCTGGAGGGTAGACTGTGACCAACAAAAACTTCTCCTGCATGTCCCAAAGAGGTAGAGGGCGAGAGAAAAAGCCCCTGGACTTTTTACCTCCTCCTCCTGTTCCCCTTCAGCGTTCTCAGCCAAAAAGCCACAGATCCTCCCCTGCACCTCCGGCAGAGGCCgcatgcagctgtcaatcaagcCGAGCGGCGCCGCCCCCCTCATTAAGAAGGTAAACAATGAATATGGACGCAGAGGGACAGGGCAGAGCAAACCACTGAGCGCAACTTGCCAAAAAAACACTAACGGAAGCTGCTGCCTCCTCTCTTTTCCTCCGAGAAGAGACGGACGGACTATTTGgagttggtggtggtggtggtgttgggTGGGAAGGGGGGGTTCAATCCCTTTTGGATTACTcccctctttttctctctctcatcgCCCTGGGCAATCACGTTAAAACTCACATGGTCGGTGCTTATTCAGATAACCCTAACAATGCACACCAATGGTAACCATGTGAGCACTCACAACCCACAGAAGAATGCGCTGGTTCAAATCCCCATGACCCTCCTCCACAGCAAAATTTATTCAAGAGTGCAACCTGCTCGGCAGCTTCAGGAGGCACAGAGCTGAGCTTCTTCTGAAAGATCACCAAACACAAACTTCACACACATGCGGACACAACTTTTGGAGCCAGCGGAGTGGGTTTGAACTTATTTTGGAGGACGAAATAACAGGAAATAAGTAGTGTTGGAGGAATCCAGGGAAAATGCATGCTCTTATTACAGCAGATTTGGGTGAGCAGTGGGCAGGCTGAGAGCGCCAGCATAAGATGGAGCTGGAGAGAGGCCAGCTGGGAACCAGACAAAGACCAACATGGACAAGGAGGGTGACGGGACAACAGTCCCCGGATTCTTACCCTAAAAATACATGAGAATTAAAGTGActtcatcaaataaataaataaacacaaagtgTCTGAATGGCTACTCTGCATCCCGTGTATATTTGCATGCATGTGAATAGAACTTGCTTAGTTTCAGAACAAGCAAAGTTTAAAGTTCAGACAATGATCTGTAAGATCAACTAAAGAATATTATGATCACCCAAATTAAATGAAACACTTAAAagtataacaacaacaaaaaaatctctgGTGTTATTTcctaaacaaacacaaacatcgTCTATTAGGGGGCCTTGTACAAAAGTGCACATTGAGAGTCAAATGCAGCAAGCGAGGGCTAAATGGAAATGAACACAGATTTGGGTGAATAGTGGAGAATGAGAAAGTGTCGTCTCGCCTTATCTCCAGTTCCAGTCAACTAGCAATCTTGAAAGAGTTTGCAACATCATCAAAGCCGGCCATTTGATAGGATTCTCACACTGCACCCAATCAATCTGAGGAATACGGCAGCCCAGACATGTAACAAAGCTCAAATAGATTTACAAATGGGGTTGTAGGGGGATAAGCCCTTGCACAGGATTACATATTGattttaaacatataaaaaagCTTATCATATAAAACCGTAACAACAAAACTGGGGGACCTATGCAGAAATCCCTTGGCAAAAAGGAGCGTCCACTTTCAAATATAACGCCCCGGAGTGCAGCGCATTTGAGGAAAGAAAGAAATAGGGAGAGGGGAGGGGGAAAAAGACGAATTTGAGAGAAAGCGTGTGTGCATGGCAGGCAGATAAAAAGGGCAAAAAGGATCAATTTGGAGGCAGAGAAATAGGAGTCATGGCATATTGTGGAAGGCCTCGCCACTTTTCTTTGCCTCCCCACAGCGGAGCACAGACTGAAGGGGTTATCGTTTAGCTGACATTAACACTCACCCTGTTTGCTCTACACCTTTAACTGAATCCATCTCGCCTTTAGAAttgactaaatattttctttGCCTTATCCAGGGGCTTCAGATCTATTAATGCGCAACACAACAAGTGTTCTTCAATTTACCTCTGTAAGTAATGTCATCTGCTGccgtattaatatatatatatattaataagaaGACAAACAAGAACAACCTGACAAAGGTTACTCCATATGTAAGGCTAGTCAAGGCTGGAAAATGTCAGATTTGAATAACTGGCTCTCTTTCAAAACTCAAAAGTGTCAATTTGAATGGAATTGGGCACACTCCACAGGAAGTTGAAGTGGAATGACAGGAAGATCAAATTACTAAATTGCAATAGTGAGCACTAAATTGCTTTCGGAATAAAAACTATTCATTTTCTCCATAAGAAAATCGATTTTAACAGTATCCGATGAATCtattgtggtaaaaaaaacaaacaaaaaagtaaaaagttaatTGTGTGTTATATCAGGCATGGGAccataaccgttttcaaggtattgACTTCATTCTTCACGTatgagtgggcgcagccatttgattttttttggcttgagatttctggtctcgttgacttccattcatttttagaggttaaaaacagcttgttacactgcctgatgttgcaaactgatattttcttattatattattctactttttatgtatagttaTGAGCATActtgtttgtaaagcaagtaatttgactgttttttgctgtttattattcttaGTCATCTCTcttataggcaactgaatcggaagttctaaaataTTCACAAAAACGAGcccacttccgcattgaagaataaggtcaataccacGGTAtggaaaagtcaatgttttaaaaacacccaaattttctgttataccgttcctagggtatgtgtaagattttttagttttttaggacaacctgtatctctagcagaaaagatctccaatgatgtcgttttaaattgtaattaaatcagtgttttataaactaatgaagacagcagaagtcaatgaatcatttgaatgatttagccggacatgtttactgctacaaatattataaatgtttcacaaaataaaacctattgtgttcaaaggggaaacgTTGTTGTGGTTTTTACCTAGACAattaaaaagagcatattttagaggttatcatatcgtcagaatcttataccggcccatgcctagtttatATAAATCAGTTATAGCTGCTATGTAATTGTGAGGTTAAAAGTTaaaatttttattgtgttttttattcagTGGCAGAAACCAACATCCATAAAAGACAGACTTGCTGATAGATCTGATGTTATTAACAGATTGTATATGGTTTTGTTGAAGTCATTTGTTCACATTAATTTGACTCAAAACAATTGTGTGCATTAGCAGAATTCATCATACAGAAAAACaccattacccatgatgctgtagAGATGGCACAGCTGTAGTGTAAAGCAGTAAaaataagttaaggtaattaggcaatcCATTAGATGACTAATGGctagtgatttgttctgtagcccattgaaaaaatattatagaggGCTAATAAAAGTGACCCTCaaaatgtttgtttgcttttgtttaaatgttaaaactgctttcatttaaGCCAAACTAAAtaaagactttcaccagaagtaaaaatggacccttttcaccaGACTGCTTTGATGCGTTTAACAATCATCATAGTCTTAAA

Function

GO:

id name namespace
GO:0048729 tissue morphogenesis biological_process
GO:0060070 canonical Wnt signaling pathway biological_process
GO:0051674 localization of cell biological_process
GO:0035239 tube morphogenesis biological_process
GO:0001732 formation of cytoplasmic translation initiation complex biological_process
GO:0002009 morphogenesis of an epithelium biological_process
GO:0006928 movement of cell or subcellular component biological_process
GO:0048513 animal organ development biological_process
GO:1990399 epithelium regeneration biological_process
GO:0198738 cell-cell signaling by wnt biological_process
GO:0009887 animal organ morphogenesis biological_process
GO:0009888 tissue development biological_process
GO:0006413 translational initiation biological_process
GO:0060429 epithelium development biological_process
GO:0048562 embryonic organ morphogenesis biological_process
GO:0048568 embryonic organ development biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0048856 anatomical structure development biological_process
GO:0048596 embryonic camera-type eye morphogenesis biological_process
GO:0048598 embryonic morphogenesis biological_process
GO:0031076 embryonic camera-type eye development biological_process
GO:0048870 cell motility biological_process
GO:1905114 cell surface receptor signaling pathway involved in cell-cell signaling biological_process
GO:0071679 commissural neuron axon guidance biological_process
GO:0106030 neuron projection fasciculation biological_process
GO:0070654 sensory epithelium regeneration biological_process
GO:0040011 locomotion biological_process
GO:0048646 anatomical structure formation involved in morphogenesis biological_process
GO:0097485 neuron projection guidance biological_process
GO:0007389 pattern specification process biological_process
GO:0048048 embryonic eye morphogenesis biological_process
GO:0032502 developmental process biological_process
GO:0007411 axon guidance biological_process
GO:0007413 axonal fasciculation biological_process
GO:0007417 central nervous system development biological_process
GO:0007420 brain development biological_process
GO:0060562 epithelial tube morphogenesis biological_process
GO:0060322 head development biological_process
GO:0009790 embryo development biological_process
GO:0016055 Wnt signaling pathway biological_process
GO:0005832 chaperonin-containing T-complex cellular_component
GO:0005852 eukaryotic translation initiation factor 3 complex cellular_component
GO:0005854 nascent polypeptide-associated complex cellular_component
GO:0101031 chaperone complex cellular_component
GO:0033290 eukaryotic 48S preinitiation complex cellular_component
GO:0016282 eukaryotic 43S preinitiation complex cellular_component
GO:0070993 translation preinitiation complex cellular_component
GO:0008135 translation factor activity, RNA binding molecular_function
GO:0042813 Wnt-activated receptor activity molecular_function
GO:0003743 translation initiation factor activity molecular_function
GO:0051082 unfolded protein binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00024900 lncRNA downstream 5677 24296350 ~ 24301689 (-) True XLOC_012106
TCONS_00024899 lncRNA downstream 87684 24203699 ~ 24219682 (-) True XLOC_012105
TCONS_00024540 lncRNA downstream 280509 24023307 ~ 24026857 (-) True XLOC_012104
TCONS_00024898 lncRNA downstream 319856 23985873 ~ 23987510 (-) True XLOC_012103
TCONS_00024897 lncRNA downstream 655030 23650534 ~ 23652336 (-) False XLOC_012099
TCONS_00023870 lncRNA upstream 253199 24570357 ~ 24571175 (-) True XLOC_012111
TCONS_00023878 lncRNA upstream 383474 24700632 ~ 24703778 (-) False XLOC_012116
TCONS_00024905 lncRNA upstream 383474 24700632 ~ 24717927 (-) False XLOC_012116
TCONS_00023899 lncRNA upstream 871453 25188611 ~ 25191072 (-) False XLOC_012123
TCONS_00023901 lncRNA upstream 871453 25188611 ~ 25197601 (-) False XLOC_012123
TCONS_00023859 mRNA downstream 412340 23820450 ~ 23895026 (-) True XLOC_012102
TCONS_00023858 mRNA downstream 579388 23710659 ~ 23727978 (-) True XLOC_012101
TCONS_00023857 mRNA downstream 598019 23681086 ~ 23709347 (-) True XLOC_012100
TCONS_00023855 mRNA downstream 633502 23651521 ~ 23673864 (-) False XLOC_012099
TCONS_00023862 mRNA upstream 13890 24331048 ~ 24439672 (-) False XLOC_012108
TCONS_00023863 mRNA upstream 32407 24349565 ~ 24364527 (-) False XLOC_012108
TCONS_00023864 mRNA upstream 35038 24352196 ~ 24353462 (-) True XLOC_012108
TCONS_00023865 mRNA upstream 162722 24479880 ~ 24521382 (-) True XLOC_012109
TCONS_00023866 mRNA upstream 220027 24537185 ~ 24564677 (-) False XLOC_012110
TCONS_00023856 other downstream 640888 23663211 ~ 23666478 (-) True XLOC_012099
TCONS_00023840 other downstream 1382029 22925209 ~ 22925337 (-) True XLOC_012088
TCONS_00023839 other downstream 1521075 22786174 ~ 22786291 (-) True XLOC_012087
TCONS_00023820 other downstream 2296698 22002857 ~ 22010668 (-) False XLOC_012077
TCONS_00023811 other downstream 2448202 21833724 ~ 21859164 (-) False XLOC_012072
TCONS_00023885 other upstream 546553 24863711 ~ 24866653 (-) True XLOC_012119
TCONS_00023894 other upstream 600192 24917350 ~ 24937879 (-) False XLOC_012122
TCONS_00023896 other upstream 611985 24929143 ~ 24937535 (-) False XLOC_012122
TCONS_00023897 other upstream 615533 24932691 ~ 24937684 (-) False XLOC_012122
TCONS_00023912 other upstream 1195766 25512924 ~ 25522751 (-) True XLOC_012130

Expression Profile

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