G388805


Basic Information

Item Value
gene id G388805
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000204
NCBI id null
chromosome length 519198
location 395932 ~ 397003 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU445083
CCAACGTGCTCGGCAGTTTTACTTAACTCAACTATTGTTTAAAAATTACTATATTTGTGGCTAAAAATGAACCCAAAATAGGTTGAAAATTAAAAATCAGACACATAATTACTAGAGGCAACAATAATAATCAAAAGGTGAACATTTAATAATGAGCAAATGTTTGTTTAATTATTTTTCATTAAACTTATTAATAAATGTTCATTTCCAACATGCTTTGGGTTCGTTTTAAGCGAGCAATACAGTCATTTTTAAACAGTAGTTGAGTTAAATAAAACTACCCAGCAGGTTGGGTCAAACATTTAACCCAGTTGCTGGGCTTGTCCATTTTCAACCCAACTTGGGTTGTTTTTAACCCAGCATTTTTTAGAGTGTGTGTATATATGTGAGAATATGTACTGTAAAGATTTGTGTTTTGTTTCCACCTTATTGTCACTAAAAAAATATCAGGGACAGGAAGCAATACTCATCCATAGGGATGAGATTATGAGTTCATTTCCTGTCAGGCTCTTTGCTGACTCTCACAATTGGCTGATTTGTTTTCCTGTTTCCTGAGGTTGGGATTTGTGCAAAGTTCTGTGGGGCGTCCGCATGCTTTTCAAATGAACAATACCTCTGTTCCACTGTACGAAAGATTGGAAAACTTCTGAAAGAATGTTCTGTTATTTCAGGCGACTCACCCGAGCTCTTAACAGCATCCATGTGTCAACCACTGTTGTTTTTATTAACACCGTTTTCCTGATCGTACGCACAAGAGCAACAATTCATAGAACAATCTTTATTGAAAGGTAGCTATTTTTCCAATATATCGTATGTTTTCAGCAGAGATTTTAACGTGGGAATGCCCTGGTTTAAACTCAGGTTCTTGGCATTCTCAGAATATATATTTGCTCAGTTCATTTTCTATCTGATACTTGATACTGACGTTACAGAGTGAGTTCACAGCTACTGCAGGACACTGTCAAGAGCTCAGGTCTCAGATACTCAAAGTATCTCCACCCACTCCATCAAGCCCCGCCCCCAGGCTAGACTGCCTCTGTCAGAACAGGCAGCCTTCCATTTTTCCCATGGC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU445083 True 1072 lncRNA 0.38 1 395932 397003

Neighbor

gene id symbol gene type direction distance location
CI01000204_00392220_00393113 PURBB, PURB, PURBA, PURB.L coding upstream 2574 391676 ~ 393358 (+)
CI01000204_00380801_00383770 NA coding upstream 11948 380613 ~ 383984 (+)
CI01000204_00361326_00370615 POLM coding upstream 24547 361326 ~ 371385 (+)
CI01000204_00347970_00349394 MRPS24 coding upstream 46326 347970 ~ 349606 (+)
CI01000204_00338062_00338298 NA coding upstream 57131 338062 ~ 338801 (+)
CI01000204_00472720_00477135 TUBA3A, TUBA3C, TUBA3E, TUBA1C, TUBA1A, TUBA7L coding downstream 75717 472720 ~ 477170 (+)
G388806 NA non-coding upstream 8686 345436 ~ 388631 (+)
G388822 NA non-coding upstream 110600 284951 ~ 285332 (+)
G388802 NA non-coding upstream 111025 283898 ~ 284907 (+)
G388721 NA non-coding upstream 112355 282805 ~ 283577 (+)
G388711 NA non-coding upstream 114129 277295 ~ 281803 (+)
G388821 NA non-coding downstream 5813 402816 ~ 407868 (+)
G388817 NA non-coding downstream 80211 477214 ~ 478418 (+)
G388877 NA non-coding downstream 98603 495606 ~ 495999 (+)
G388799 NA other upstream 173160 220155 ~ 222772 (+)
CI01000204_00033958_00057140 NA other upstream 361440 33908 ~ 57362 (+)

Expression


Co-expression Network