XLOC_012116 (si:ch211-15d5.11)


Basic Information

Item Value
gene id XLOC_012116
gene name si:ch211-15d5.11
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 24695594 ~ 24717927 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00023877
ccttATTAAAAAGTGAATATAGCTGCTTAGCTATAACGCACTGATAGCTACAAATATGGATTCACTcatataaagatatatattttatcCAATGCATTCTATGTGGACATTTAGCTGATGTACTTGAGAATTTAGGAGATTTTGATCGCAGTGTTGTGCTCTTATCTCATGACTGGTGACAGATTCACTGCAGCGGCATCAAAACACATGACAGCCCATCATGCGGAGCGTCCCGATCAGCTGCTCATTTTCTGGCATCATTAAAGACCAAGGTTTACTGTAGAGTCCAGAGAatgctgatgatgatgaggatggtgaggaggaagaggaagtaTTCCAGATGCCGACGCAGCAGTGGGCAGTCATTTCATCGCTGATTCCTGCACTGGAAgtgtgaacttttttttaaactgaccAGTTCTCAATCTCAGCAGTGAGACCTCATGGACCACAGAGCTCCGAGAGACAAGAGCAGGGCCAGCTATTTTGGAAATGTTAAAAACAGACTGGGATCAAAGCTGCCAGCTGGAATTTCGCAGACTCCAGGCTTCATTTCTGCTCAGTGCTCCATTGGTGCTCCGGGTGCGATGGGGAGGAGTGTTGGACAGGAGGGCGTCAAAGGACATCACCATATCCGAAACCCCAAGCTAAGACAATACTATCTGAAAGAGGCGGCGTTTCCAGCCAAAGATCCAACAATGAAGACTTTGGCGTTATGCACAAACAATGGAGATGGATTACCCAAGAAAAAGGCATCGACTTCTTCACCAACAGCTTCTGTCCCAAGCCTCAATCCCTCGCTGGACACTTGTGTGGTGGGAACAGCAACTCTTGTGTCTCCCTCCACAGATGCAGAATATGACAAGCTGATGGATGTGGAGGCGGTTCCTTTACCTGATGGAAATGTGTGTTTATTGGCTCTTCCATCTGAATGCTCTCAAGGGGAGGATCCAGCCGGCTTGTCTTGCCTAAAGCTTGTCTCTCGTTACATCACAGACAGAAAGGGGGTGGTGTCTGGAATACTGCTGGTGACATCCAGTAAGATCTTTTTTGACCCTCAGAAGTCTCACCCACTGGTTCAGGAGAACAGCTGTGAGGAATATGTGTTCTCCTGCTCTGTGGATGATCTTGCCTCGGTGTCCTTCTACACGGATATCTCTCATGTTTACTTCAGCAAGACCACACACAGATGTAACAGTTCTAAGACATCAAAGAGCAAAACGCATAGCAACAAGAAACCCCACCACTCGGCATTAGAGGACATACCTGCTCCTGCTTCATGTGATCCCACAGCAGCTCCGAGTGCGAAAGCTGAAGTAGAGGATGAGGAAAGTGGAGAGACTGGAGACATGGCCGAAGCTGAGAGACAGCTGACTCTACAATCCGGAGGAATGCTAACTGCGGCTGCTACTTTCTGCTGTGGAGGACCAGACAGCGTCCAGAGAGGAAACAACCCATTTGAACACTCAGACAAAACCCAACAGCAGTCGTATTGGGAAAGACAGTTATTAGATCCATGCACTTCAACATCAAATTGTGGCATAAACGGATCTCTGATGTTTGTGAGAATTCGACAGAAACTGCAGCATGGGAAGAAAAGGGCTTTTTCTAAATCTAAAATTGCATCTAGAGACGCCTGGTTCACCATGCAGCAGGAAAGGTCAGATGAGCTGTACGCTTACCTGAGTCAACATCGGCCTGACCTGTGCATCCTGGAGGGAGATGAGGAGGACGAGGCAGAGCGTGATGAAGAGGATTTTGTGCTTCTGGATGAAGAGGAGCAGGAAGAAGAAGATGAGTCTCCACGAGCAAGCCACACTGGAGAGGACTGGGAGATTGTGTCAGCGGAGGAGAGTGCGCTGAAAGCTCCAGGCTCTACTGAACCAGATAGTTTGAGTTACATACTGAGCCAGAGTGTCATACTGGATGCTCAACAAGTTAAAGAGATCTCCAGAGAGCTTCCTCCACGTACAATTGGATACACGTGGCAGCTGTCGTACAGCACAGACAAACATGGTGCCAGCCTCAAGACTCTTTACAGGAAACTCAGCGCCACGGACTCACCTGTGCTGATTCTCATCAAGGACCACAACCAGCAGGTTTTTGGGAGCTTTCTTTCACACCCGCTACATCCCAGTGATGCATTTTATGGTACTGGAGAGACCTTCCTGTTCCTGTCTCACCCACGCTTTAAGtgTTTCAAGTGGACTGGTGAAAACTCCTTTTTCATCAAAGGAGATTTGGACTCTTTTGCCATTGGAGGAGGAAGTGGTCATTTCGGTCTGTGGGTGGATGAGAGGTTGTTTTTGGGCAGGAGCAGCCCTTGTTTCACTTTCAACAACTGCAGTCTGTCGGAGACCAACGATTTCACCATTCTGGACCTGGAAGCCTGGACATTCGGCTGACAGaacaaacattgtaaataattcgaAACATCTTGATTTAGCGGGAAATATGGCCATTAATCATGAGTTTACTGACACTGGTAAAGGAAGGGAATGAGACACTGCGAACTGTGAAGTCAAGGGAAGAGTTTTACATTAAATGAAAGCTCACCCATCGTGTTTACTACCAtcatgaagaagaaaaaaactgcttTGTCTTGTGATTAAGATGTATTTGAGTTTAAGGATTTGAGTTCAGGACTTAAATAAGTGCACATCATCGGACAAGAAATAGTTTTGGGCTGAATGAAGGACTTTATACCTAACATTAGCTCAATGGTACGTTTCTAACATTGAAGTTGATGAAGAATCCCATTTTGTTACAGTGTgaatactgtacatttttgtcTAAATCTGTTATTGTAGGACTCTAAACCTGACTTAAAAAGGATAGTTCaaacaaaaatgcacaaaaatgtcaatttactTCTTTCCAACCCTCAAGTGGCTCCATATCcttatctaaaatatatatttgaaaaaaaaaacattgacttcgATAGctggataaaaaaaatactatgatagaaatagttacaggtttccatcttatttcaaaatatcttcttttgtgttcaacagaagtcaAAATTAAAGGGTATGTtaattatgacagaattgtcagttttgggcgaactatccctttaacaccaCTGATTATAGTCTTGTGTGCTGTTAGTAAGCACGCCATTGGCTGTATACACTGGTTTAGGCGTTAGTTTAAAGCCACAGCTGCACTTTTACACATGGAAAAGTTTTCGCATCACTCAagccaaaacaaaaccaacactgAAATGACTTTGGGTTGAATACCACAAGCATAAACTCTCAGACAAACCTCAGTTGCATGTTTTAATGTCTTGAGAGGCTTTTGGCTTCACAATCCTTTCTTAGAAATTCACATCAAGTCTTAAAAATCCCTGTGGAAGGATGATTACTGACATGTAGGAAAACCTTCTTTCTGTAAATAACTCTTAAAATGGTAATAACACCAGTTCACAAAGATGTCTGTGCAAAAACAATAGCTCTGCAAATCGTAAATAAGAGTCAAACCAATGCAATATTTATACATGTGAAAATGCAATCACTCAATACTGGAAGTGTTCATTAACTCATTGCCTAATAAAGCAGATTAACACTT
>TCONS_00023878
ATGCTATTGCTTTATTCAGCAAatttgttttcaacatttatGATGTTTTCTGCAATTACATACATTACAATGTTTCCTGTGCATTAAAGTAgcattttaaatgttacaataTTACTGCTGTTCCTTGAAGAATTTTTACAAACCCGAAACATTCGTTCACCTTTATCTTATATTATCTTTAGATTGCTGGCCTTACAAGACACAGTGGGTCACCTCTTGCGTACATGCGTATTTTATCCTCTCAGATATATCTGTTTATTCTCATTATATACAAGATGataaatgttcatacattatgattttaaaatgtatgtgtaAAATACCTTAACAGACCAAGATGATTAGAGGATACCTATTGGTATCTTAAAGAACCTATAGCTGTTTTACAAATAAGAAATGACTATAAGTACTTACTAGATAAGAAGGCCAGCCCAATTACTGTGAAAAAGTTATATTCATCGAAAAAGAAAAGGCTGTTTTACAGGTACCACAGCGCCTTCGGTCGTGAGAGTGGAGAACTGCAGCTCAACCTCAAACACTCGCGTCCGCGCACAGCAGTGACGTCATCGCAGTGTCCAGGAGCCTTTGCGCGTTGATGTTTATCGTGTTTTCGCAGCTAAAATGAAATTAAGTAACTTCGAGAAGACGTTGGCGGAGAACGTACGGCGACACAGGATCATCTATGACCCGAATCTGCACGATCATGGTGACCTTGAGTTGACACAAAGTGCGTGGAACGATATCTCCGCCGCCACGGGGAAGAACGAAGCGGTGTGCCGTAAAGCGTGGAAAAATCTAAGAGACAAGTTTGTGCGGATCAAGAGGAAGATCCACACGAACAGCAAGGATCCAGGCTCATACAGGAAGATCGTGGCAGAGTTGGGGTGGTTGTGCCAATATGTTAAACATCGAGAAAAAAGTCTGAATGCGAAGGATGGATGTAAAGGAGTCACGTTTGAGGAGTTCATGAAGACAGACAACTTACAGATGTCCTCAGCATCAGGAACATCAGAGACTGGGACTTCAGACAACCCTTCACCTCTGTCCCTCATGCCATCATCGCCAGTTCCATCCACTCCTGTTCTCCCTACTCAATCTACTCTTGTTCCTGCTACCTCGTCCACACCGCCTCCACCCTGTCCATCGTCCAAATGTTACCCCTCGCCTTGTTTAGTTTCAGCTTTCTCTGTCCCAAATATCTCACCCAGTCCCAATGCCTCACCATCTTCTTCAGAATTGATGCCTAAAAGGAAGTCCACCTCTGAAGCTTGCTTGTTGAATATGCTGGAGCAGATGGAATGGACACGGGAGAAGACCCCACATCAGGACAGTGAGGATTTCAGATTCGCTTCTGTCGTCGTGGACATGTTGGCCAAAATTGACCCTCGGATGAAATCCGAGGTTAAGTTCAAGATATATCAAATGCTATATGAGGCTGAGCGAACCAACAAGTAACTGAAAGCATTCACTGAAGACTGAACTACAGAAAGATTATTTTCTTGAATATGGCCATTTTGCAAATAGAGATTGCACAGCATTACAATTgtgaatagttttatttatactttaaaacTATTGTAAAAGTATCTGTTAGTCATCTTTTATTAAACATGGAAAAAAACTGTTGAAACTGAACTGgagtatgattttatttttaataaagtttcaAAACTCATTTGTGTATTGCTGCTATGTGGAGACACGAAGTGAACACAGGTCAAAGAATATGATCAGTTTTTATGTGGTATTAGAGTTCAGTTTAATAGATTAGAAACTACACTGCATACCTTAATGAGTCCACAAACTACATGCATTATTAAAAGGTTTTACCTTAAATTAAGTACACCACAAGGATTAATAAGAGCCAGCAAAATGGAAATTGAATGTACTTATATGGTGACAACAGCTGTTTTAATTACATAGCAGGGTGTAGTTACAGCATCAGCACTTTTTATGTTTGGTAAGATTTTTATACTGCAGTAAAAACCTTAATCGgttttattatggtggcttgagaaagccaacatactgttatactacctAAACTTACTATTTTTCTGTCTTGTTCTTCCTCGGAGACTAATTTCTATATGCATCTTCTCTtacaaactggtc
>TCONS_00024905
caccttATTAAAAAGTGAATATAGCTGCTTAGCTATAACGCACTGATAGCTACAAATATGGATTCACTcatataaagatatatattttatcCAATGCATTCTATGTGGACATTTAGCTGATGTACTTGAGAATTTAGGAGATTTTGATCGCAGTGTTGTGCTCTTATCTCATGACTGGTGACAGATTCACTGCAGCGGCATCAAAACACATGACAGCCCATCATGCGGAGCGTCCCGATCAGCTGCTCATTTTCTGGCATCATTAAAGACCAAGGTTTACTGTAGAGTCCAGAGAatgctgatgatgatgaggatggtgaggaggaagaggaagtaTTCCAGATGCCGACGCAGCAGTGGGCAGTCATTTCATCGCTGATTCCTGCACTGGAAgtgtgaacttttttttaaactgaccAGTTCTCAATCTCAGCAGTGAGACCTCATGGACCACAGAGCTCCGAGAGACAAGAGCAGGGCCAGCTATTTTGGAAATGTTAAAAACAGACTGGGATCAAAGCTGCCAGCTGGAATTTCGCAGACTCCAGGCTTCATTTCTGCTCAGTGCTCCATTGGTGCTCCGGGTGCGATGGGGAGGAGTGTTGGACAGGAGGGCGTCAAAGGACATCACCATATCCGAAACCCCAAGCTAAGACAATACTATCTGAAAGAGGCGGCGTTTCCAGCCAAAGATCCAACAATGAAGACTTTGGCGTTATGCACAAACAATGGAGATGGATTACCCAAGAAAAAGGCATCGACTTCTTCACCAACAGCTTCTGTCCCAAGCCTCAATCCCTCGCTGGACACTTGTGTGGTGGGAACAGCAACTCTTGTGTCTCCCTCCACAGATGCAGAATATGACAAGCTGATGGATGTGGAGGCGGTTCCTTTACCTGATGGAAATGTGTGTTTATTGGCTCTTCCATCTGAATGCTCTCAAGGGGAGGATCCAGCCGGCTTGTCTTGCCTAAAGCTTGTCTCTCGTTACATCACAGACAGAAAGGGGGTGGTGTCTGGAATACTGCTGGTGACATCCAGTAAGATCTTTTTTGACCCTCAGAAGTCTCACCCACTGGTTCAGGAGAACAGCTGTGAGGAATATGTGTTCTCCTGCTCTGTGGATGATCTTGCCTCGGTGTCCTTCTACACGGATATCTCTCATGTTTACTTCAGCAAGACCACACACAGATGTAACAGTTCTAAGACATCAAAGAGCAAAACGCATAGCAACAAGAAACCCCACCACTCGGCATTAGAGGACATACCTGCTCCTGCTTCATGTGATCCCACAGCAGCTCCGAGTGCGAAAGCTGAAGTAGAGGATGAGGAAAGTGGAGAGACTGGAGACATGGCCGAAGCTGAGAGACAGCTGACTCTACAATCCGGAGGAATGCTAACTGCGGCTGCTACTTTCTGCTGTGGAGGACCAGACAGCGTCCAGAGAGGAAACAACCCATTTGAACACTCAGACAAAACCCAACAGCAGTCGTATTGGGAAAGACAGTTATTAGGTAAACTAAAGAACTTCATCAAAAAAGTTATCTTTTTACTCATCACCTTATGCTTTTAGATATCTCTCTCTTTACTTAGCAGATCCATGCACTTCAACATCAAATTGTGGCATAAACGGATCTCTGATGTTTGTGAGAATTCGACAGAAACTGCAGCATGGGAAGAAAAGGGCTTTTTCTAAATCTAAAATTGCATCTAGAGACGCCTGGTTCACCATGCAGCAGGAAAGGTCAGATGAGCTGTACGCTTACCTGAGTCAACATCGGCCTGACCTGTGCATCCTGGAGGGAGATGAGGAGGACGAGGCAGAGCGTGATGAAGAGGATTTTGTGCTTCTGGATGAAGAGGAGCAGGAAGAAGAAGATGAGTCTCCACGAGCAAGCCACACTGGAGAGGACTGGGAGCTAAAATGAAATTAAGTAACTTCGAGAAGACGTTGGCGGAGAACGTACGGCGACACAGGATCATCTATGACCCGAATCTGCACGATCATGGTGACCTTGAGTTGACACAAAGTGCGTGGAACGATATCTCCGCCGCCACGGGGAAGAACGAAGCGGTGTGCCGTAAAGCGTGGAAAAATCTAAGAGACAAGTTTGTGCGGATCAAGAGGAAGATCCACACGAACAGCAAGGATCCAGGCTCATACAGGAAGATCGTGGCAGAGTTGGGGTGGTTGTGCCAATATGTTAAACATCGAGAAAAAAGTCTGAATGCGAAGGATGGATGTAAAGGAGTCACGTTTGAGGAGTTCATGAAGACAGACAACTTACAGATGTCCTCAGCATCAGGAACATCAGAGACTGGGACTTCAGACAACCCTTCACCTCTGTCCCTCATGCCATCATCGCCAGTTCCATCCACTCCTGTTCTCCCTACTCAATCTACTCTTGTTCCTGCTACCTCGTCCACACCGCCTCCACCCTGTCCATCGTCCAAATGTTACCCCTCGCCTTGTTTAGTTTCAGCTTTCTCTGTCCCAAATATCTCACCCAGTCCCAATGCCTCACCATCTTCTTCAGAATTGATGCCTAAAAGGAAGTCCACCTCTGAAGCTTGCTTGTTGAATATGCTGGAGCAGATGGAATGGACACGGGAGAAGACCCCACATCAGGACAGTGAGGATTTCAGATTCGCTTCTGTCGTCGTGGACATGTTGGCCAAAATTGACCCTCGGATGAAATCCGAGGTTAAGTTCAAGATATATCAAATGCTATATGAGGCTGAGCGAACCAACAAGTAACTGAAAGCATTCACTGAAGACTGAACTACAGAAAGATTATTTTCTTGAATATGGCCATTTTGCAAATAGAGATTGCACAGCATTACAATTgtgaatagttttatttaagtatgattttatttttaataaagtttcaAAACTCATTTGTGTATTGCTGCTATGTGGAGACACGAAGTGAACACAGGTCAAAGAATATGATCAGTTTTTATGTGGTATTAGAGTTCAGTTTAATAGATTAGAAACTACACTGCATACCTTAATGAGTCCACAAACTACATGCATTATTAAAAGGTTTTACCTTAAATTAAGTACACCACAAGGATTAATAAGAGCCAGCAAAATGGAAATTGAATGTACTTATATGGTGACAACAGCTGTTTTAATTACATAGCAGGGTGTAGTTACAGCATCAGCACTTTTTATGTTTGGTAAGATTTTTATACTGCAGTAAAAACCTTAATCGgttttattatggtggcttgagaaagccaacatactgttatactacctAAACTTACTATTTTTCTGTCTTGTTCTTCCTCGGAGACTAATTTCTATATGCATCTTCTCTtacaaactggtc
>TCONS_00023879
AAGGACATCACCATATCCGAAACCCCAAGCTAAGACAATACTATCTGAAAGAGGCGGCGTTTCCAGCCAAAGATCCAACAATGAAGACTTTGGCGTTATGCACAAACAATGGAGATGGATTACCCAAGAAAAAGGCATCGACTTCTTCACCAACAGCTTCTGTCCCAAGCCTCAATCCCTCGCTGGACACTTGTGTGGTGGGAACAGCAACTCTTGTGTCTCCCTCCACAGATGCAGAATATGACAAGCTGATGGATGTGGAGGCGGTTCCTTTACCTGATGGAAATGTGTGTTTATTGGCTCTTCCATCTGAATGCTCTCAAGGGGAGGATCCAGCCGGCTTGTCTTGCCTAAAGCTTGTCTCTCGTTACATCACAGACAGAAAGAAGTCTCACCCACTGGTTCAGGAGAACAGCTGTGAGGAATATGTGTTCTCCTGCTCTGTGGATGATCTTGCCTCGGTGTCCTTCTACACGGATATCTCTCATGTTTACTTCAGCAAGACCACACACAGGTG

Function

symbol description
si:ch211-15d5.11 Predicted to be involved in response to oxidative stress. Predicted to be active in nucleus.

GO:

id name namespace
GO:0006979 response to oxidative stress biological_process
GO:1903204 negative regulation of oxidative stress-induced neuron death biological_process
GO:0005634 nucleus cellular_component
GO:0005730 nucleolus cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-131121-177 Predicted to be involved in response to oxidative stress. Predicted to be active in nucleus.

Ensembl:

ensembl_id ENSDARG00000063511

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00023877 False 3585 mRNA 0.43 15 24695594 24717925
TCONS_00023878 False 2115 lncRNA 0.39 2 24700632 24703778
TCONS_00024905 False 3341 lncRNA 0.44 12 24700632 24717927
TCONS_00023879 True 517 mRNA 0.48 5 24709134 24714837

Neighbor

gene id symbol gene type direction distance location
XLOC_012115 morn2 coding downstream 10907 24681280 ~ 24684687 (-)
XLOC_012114 arhgef33 coding downstream 14629 24668528 ~ 24680965 (-)
XLOC_012112 CR352220.2 coding downstream 63613 24588834 ~ 24631981 (-)
XLOC_012113 NA coding downstream 91669 24602633 ~ 24603925 (-)
XLOC_012111 aftphb coding downstream 107908 24569988 ~ 24587686 (-)
XLOC_012117 trmt61b coding upstream 97259 24815186 ~ 24820801 (-)
XLOC_012118 CR388164.1 coding upstream 119755 24837682 ~ 24838927 (-)
XLOC_012119 hmgcl coding upstream 137457 24855384 ~ 24866964 (-)
XLOC_012120 zbtb8a coding upstream 151444 24869371 ~ 24890932 (-)
XLOC_012121 si:ch211-195o20.7 coding upstream 173829 24891756 ~ 24916889 (-)
XLOC_012107 NA non-coding downstream 377023 24307366 ~ 24318571 (-)
XLOC_012106 NA non-coding downstream 393905 24296350 ~ 24301689 (-)
XLOC_012105 NA non-coding downstream 475912 24203699 ~ 24219682 (-)
XLOC_012104 NA non-coding downstream 668737 24023307 ~ 24026857 (-)
XLOC_012103 NA non-coding downstream 708084 23985873 ~ 23987510 (-)
XLOC_012123 NA non-coding upstream 470684 25188611 ~ 25197601 (-)
XLOC_012124 NA non-coding upstream 526511 25244438 ~ 25246610 (-)
XLOC_012130 NA non-coding upstream 794997 25512924 ~ 25522751 (-)
XLOC_012132 NA non-coding upstream 867560 25585487 ~ 25586858 (-)
XLOC_012133 si:ch211-214p16.2 non-coding upstream 869698 25587625 ~ 25588430 (-)

Expression


Co-expression Network