CI01000208_00166197_00172408 (TFAP4)


Basic Information

Item Value
gene id CI01000208_00166197_00172408
gene name TFAP4
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000208
NCBI id null
chromosome length 699623
location 165992 ~ 172408 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000208_00166197_00172408.mRNA
CTTAGCAAACATTCCCCTCACGCCAGAGACGGCGCGGGACCAGGAGCGACGTATTCGGCGGGAAATCGCCAATAGTAATGAGCGCCGACGCATGCAGAGCATCAACGCTGGCTTCCAGTCTCTGAAAACACTCATCCCGCATAGTGACGGGGAAAAGCTAAGCAAGGCTGCCATCTTGCAGCAGACGGCCGAATACATCTTTTCTCTGGAGCAGGAGAAGACGCGGCTGCTGCAACAAAACACCCAACTCAAACGCTACATACAGAAGGAGTTCAGCGGCTCATCTCCGAAGAGGAGGCGTGCCGAGGAGAAGGATGAAGGGATCGGATCTCCAGACATTCTGGAGGAGGAGAAGGTGGAGGATCTCCGGAGAGAGATGATCGAACTCCGACAACAGCTGGATAAAGAGCGCTCGGTTCGCATGATGCTGGAAGAACAGATCCGTTCATTGGATGCCCACTTGTACCCCGAGAAGCTCAAGGTGATCGCACAGCAGGTCCAGGAACAGCATGTGCAGACGCAAACTCTGCTCCGCCTTCAGCAGCAGCAGGAACAGCTGGGAAAAGAGACCAGCACCCCTGCTCGCAGCCCGCTGGTGTATTCTCCCGCCACGCCGCCTGCACCCACTCATCACGCCACAGTAATCGTTCCCGCCCCTGCGCCGCCACCCCCTCCCCATCATGTCACTGTGGTAACCATGGGCCCCACCTCCGTGATCAACACAGCATCCACATCACGACAGAACTTGGACACCATTGTGCAGGCTATCCAGCACATCGAAGGCACGCAGGACAGGATGGTCGTGCCCGAGGAGGAAAAGCGCCGGGCGGTCATCGTCACCCCGGGCCGTGTCCTCACAGACACCGGAGACTCTGACACCGCCTCTGACAACGAAGGATCTGAGGACTGTTAACTGCCCCAGTCACCCCCATCCCCATATCCCCCCCCACATGTAAACGGGGGGCACAGAGAGGGGCGAGGGGGTCTGTGGAAGGGCCTCCACAGAAATACTCTTTCTTTCTCTCTCCTCTCTTCCTGTCACTGTATTCTTCACACTTGCATACGGGACTCACAGACTCAATGACTTGAAAGTTTCTCGGGGGGGGGGGGGAACTAAA

Function

symbol description
tfap4 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Orthologous to human TFAP4 (transcription factor AP-4).

GO:      GO:0001077, GO:0003677, GO:0070888, GO:0043565, GO:0005634, GO:0003713, GO:0043065, GO:0006366, GO:0042826, GO:2001269, GO:0042803, GO:0008285, GO:0071157, GO:0017053, GO:0006461, GO:0045892, GO:0043392, GO:0043922, GO:0043923, GO:0006978, GO:0000978, GO:0044212, GO:0071549, GO:0003700, GO:0003705, GO:0006357, GO:0045944, GO:0045736, GO:0005515, GO:0046983, GO:0046982, GO:0045893

KEGG:

id description
K09108 TFAP4; transcription factor AP-4

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000208_00166197_00172408.mRNA True 1118 mRNA 0.57 6 165992 172408

Neighbor

gene id symbol gene type direction distance location
CI01000208_00138618_00140900 SRL coding downstream 25092 138216 ~ 140900 (-)
CI01000208_00063286_00130616 ADCY9 coding downstream 35376 63286 ~ 130616 (-)
CI01000208_00049734_00056511 NA coding downstream 108118 49677 ~ 57874 (-)
CI01000208_00027619_00033067 CREBBPB coding downstream 132925 27614 ~ 33067 (-)
CI01000208_00189190_00197915 NA coding upstream 16625 189033 ~ 198562 (-)
CI01000208_00230211_00232876 PAM16, PAM16.L, PAM16.S coding upstream 57752 230160 ~ 232876 (-)
CI01000208_00236631_00242025 CORO7 coding upstream 64196 236604 ~ 242025 (-)
CI01000208_00288775_00294023 NA coding upstream 116278 288686 ~ 298024 (-)
CI01000208_00329225_00336625 NA coding upstream 156780 329188 ~ 338157 (-)
G390760 NA non-coding downstream 42229 115697 ~ 123763 (-)
G390759 NA non-coding downstream 50849 109796 ~ 115143 (-)
G390761 NA non-coding downstream 60141 95336 ~ 105851 (-)
G390785 NA non-coding upstream 12831 185239 ~ 276072 (-)
G390783 NA non-coding upstream 56106 228514 ~ 242700 (-)
G390776 NA non-coding upstream 61576 233984 ~ 235716 (-)
G390782 NA non-coding upstream 139565 311973 ~ 322059 (-)
G390897 NA other upstream 382203 554611 ~ 558680 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00018119 tfap4,LOC107661646,LOC107718566,LOC107553667 misc CM030135.1 CM030135.1 2247853 ~ 2266775 (+)