AMCG00018119 (tfap4,LOC107661646,LOC107718566,LOC107553667)


Basic Information

Item Value
gene id AMCG00018119
gene name tfap4,LOC107661646,LOC107718566,LOC107553667
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 2247853 ~ 2266775 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018119
AAATACACACACGTACatgcggagagagagagagagggagagggagagggagagggagagagagagagagagagcgccgAGGAAACCCCATCAGCTGGAGCAGAGCAACATTACAACTCGCACACTTCCACACGGGCACACGCCATCAAAACACACCTCGGCACGGAGAGACGAGGCAGCGAGGCGCCCGGAGGCAGGACGTGGGAAAGCAGGAGGATCGCGGAGCCGAAACTGGAGAGGAAAGCATGGAGTATTTTATGGTGCCGAGTCAAAAGGTGCCCTCTTTACAGCACTTCAGGAAGACGGAGAAGGAGGTGATCGGCGGGCTGTGCAGCCTTGCCAACATTCCTCTGACCCCTGAGACGCAGCGCGACCAGGAGCGGCGCATCCGGCGAGAGATCGCCAACAGCAACGAGCGACGCCGCATGCAGAGCATCAACGCTGGCTTCCAGTCGCTCAAGACGCTCATTCCACACACAGACGGCGAGAAGCTCAGCAAGgcgGCCATCCTCCAGCAGACGGCCGAGTACATCTTCTCTCTTGAGCAGGAGAAGACACGACTGCTGCAGCAGAACACGCAGCTCAAGCGTTTCATCCAGGAGTTCAGTGGCTCATCACCGAAGCGGAGACGCGCCGAGGAGAAGGATGAGGGCATCGGCTCCCCGGacatcctggaggaggagaaggtggaggaCCTGCGCCGTGAGATGATCGAGCTCCGGCAGCAGCTGGACAAGGAGCGCAGCGTCCGGATGATGCTGGAGGAGCAGATCCGCTCCCTGGAGGCGCACGTGTACCCCGAGAAGCTGAAGGTGATTGCGcagcaggtgcaggtgcagCAGGCCCACGAGCAGGACACCCGGCAGCGCCTGCAGCAGCACGAGcgtctggagagagagactccGCCCCCCCGGCCCGCCCAGGTCTTGCCCCCCGTCACGCCCCCGGCCCCCACCCACCACCCCACAGTCATCGTCCCCGCCCCGgcgctgccccccccaccacatcACGTCACCGTGGTCACCATGGGCCCCGCCTCCGTCATCAACACGGTGTCAACGTCACGGCAGAACCTGGACACCATCGTGCAGGCCATCCAGCACATTGAGGGCACGCAGGAGAAGGCCGGCACGGACGAGGAGCAGCGGCGCGCGGTGATCGTGACGCCAAGCCGCGGCCTCCCCGACGCCCCGGACTCGGACACTGCCTCCGACAGCGAGGGGCCCGGCGAGGCAGAGCTGCCCTGATCAggagtgggagggggagggaagcaaagaaagacagcccccctgacacacacacacacaatccctccACGCCCCACCGTATctcctcccacacacacacacacacacacacacacacacacacgcatgcactcGCACACAGAGGCTGTGCCACTCTGCTGGGGACGGGGTGCGCAGCGCTCAGCCTGGGCTGCGATTCGAACACGgccacctgtctgtctgtctatctgtccaTCAGGCCACCATCTCCAATACTGTACAACTTACAAAACCGTAAGAGCCCTACAAAGATGCCCTaccccccccaccgccccctGCCTCCTTTTACaactgttgtttgtttgttttttgtatttgaaaacgTCCCGGGGAGGCTTTGTACAGCTTGACACTGTGAGAATCtcaatgttttggttttgttaagtttttatttcttcagctCTTCCCACCTCAGGCTTTGGGTTGAGGAAACGATCCTCCCTACAGTAGCCCTGCCCGCCTCCCCCCGCTGGCCCGTGTCTTTCACAGAGTGCTTCGAACCCCCCCTTATTGGAAAAATAGCATCGAAAGTCTCGTATACTTTCTCATTCGAGATGTAAAGACTGCCAAAGACTGTGCCTTCCATAGGTGTAGATGTTAAAATGTCCACCAAATATCTATGGTTTCTGCCGTGTGGCCGGGACCTGACCGTCACCGGGGATAAAACGCCACTTATCATAAACCTAAGGCCGGCTTTTAATTTGTCTCTGTTGTACAGCCAGCAGCTGGAGACAATTCCCAAGAGGACAGGTTCGCACGTTCGTCTTCAAAGTCCCACTTTTGGGGAAACGTgcaaaaaacaggaaacaatcTCCcgtttttttgttctctttacCAAATATCATGGTGTGTGGCCGCCGTAACCGGACTGCACCGTTTGGCGCTGTGTAGCAGCGGACTCCGTGTCCCGAATCGCACTCTGCCGGCTGCAGCGGCAGTGAGACGGGCTCGGGGGGGGGGACGCCTACGCTGCCCTCGCTCGTGGCCGAAGTCCCTCCCCCACACAGCGTGTCCCGCGGCGGGTTTCCACTGGGCGCTCGATGTATCGTTTACATTTCCGAAGCTGCCAGCCTTTTCCGTTCAGCGTGGTCGAACTCCGTGATGCTGCTTTCTGACGCCGCAGTGGAATCCACCACGATCCCCGGTGCCGCCGGCGCTGGTTATTGTTCTGATCTGTCGCAGTGAATAAGCTATCCTACCGTTGTGCGGCTTTGAGGAACGACGTGATACTAAgtaggtgtttttgttttgtttttaagggttAACCTGGGCCTTTACAGAGAgtcgtatgtgtgtgtgtgtgtgtgtctcctgctTGTCCCGTGTGCGTGTCGTGTGTGTACACAGCTGCTGTGTTTACAGGGCCCCCGGGGGCCACTCCGTCTCTCGCAAGGAGAGTTCGCGGCGGGGGGGGAGGCCTGTGCCGCGGCCGACGCCTGTCTGTGTCGGCGGACATATCTATGCATGCTCACACGCACAATCATTTCTCGACGGCCTGCAGCTCCCGCGCCGCTGCCCTCTAGCTGCCGCCAGTCTCACACCGATGGGCGCGTCTCTCAGAGCTCGCCCGGATGAACCCTAGTGACGGCGGCTCCCTGCGAGTGGCGGAGCCGGTCTGAATGACCCCTGACCCCCATCCTCATCTCCCGAGTGGCTGCTGTATATTGGAAAAAGGCATTGGTTTTTGTGACATGAATTCAATCATCTGTAagtctgttgttgttgattaaGTTTGTCTCGGCTACGAGTGTGTATGACAATAACAGGAGCCCTGGTGCGTGAGCCTGGCGTTACTCTAGAGTGCGAGtgaagtcattttaaaaccttttgaaTAATTTGTGGAAAGGCAGTGCCCTGTGGCCGGATGGGACATTTTGTGATTGTAAATATTCTGGCATGTGGAACGCAATTAATTCCACTTGTCAgttgtggccctccaggacttTTAGGCACTAGGTtaagaggtgtgtgtgtgtgtgtgtgtgtgggtatatGTGCGAGACTTACACACAGATGGTGTGTAGAAATACTCCCTGCTTCCTGGTTTGGTGTGTTTTATGGCAATATGCCCAATATAACCCTAAACATGGAAACCTTTAGGtaacacataaaaataatactaaaccCAAAACAATAGTGGCAAACGAGAAACAAATAgatttaataaactaataaacgcATCTCTATATAAGAGTTAGCGTTGCGCCAGCAGTTCTGTTGAAAGAAAGACCGAATCAATGGTGTCCCTCGGTGAACAGCCTTGTGGGTTCAGTAACGCATCACTTCCTGCTGTGAGGAGCTGGCTTCCTGTCCAGCAGGGCGGGGCATCGTGTCATTCCTTACTGTGCTGTCCCACGGCCCGACACCACCACGACGCCATGTTTTTAGGCACAGTTGGTGTTATGTGACCAGAGTCACACAGCAGTCAACAACTAAGACTTTTATATCCATTTAGAATcggtttattttatgtgtttttggtGCTGGACGTTCTCTGGCCCAGAGGAGAACCGTCCCGAGCATCGGCCGCTCTTCCTGTCCTGATCCAGATCTCTCTCTGTTGGGGGGGCTTTTCTATCACCGCTAGAGCAACTACAGAGCGGTTTTAATTAtggctctcctcctctctcttcacCAAGCGCTTATCATGATGCGGCTCAGGTGTAGTTTGTCTGTTtccgcccccgccccccccccacccccttgttTGCCACCACTACCGTTAGGAGGGTCTCCCCTGGTCTTCTGAGGTTGAGGGGCCGCAGCAGGGTGGGCCGGGGGTCCGGGCTGGACAGAGGGCATGTTGAGATTTAAGCGGAGAGTGGGGGGAATATACGTGACTTTAGGCCACTTCCTCAAATCAGTCTTCGTCCTTCGGTGTGTGAACTGTACTGGGGCTCCCGgcgtgtttttatttcatgtttttatgtcttTGGATCGATTCCCGCTTAACAAAACCCAGAAACCGCACGCAATATACTTTCAGCCAAGAACTGGATCAGGATATTAGTTTCTACAGCGAACACTCGCTACATTTCCTCTACTGAAGCTgcaaggtttgttttttttatgttgtttttttgtgttttttcctgtaAAATCTTTATTGTGTTCAAGACATCAGATACATATCAAAGGCTGGTGAACGAGATGCTGAAATGGGATAATGAATTGATAATGAAGCACTTACGTCGgaggattatttttttttaaaggaatactAGTTGATTTAAAgctcttgttgttgttgttgatgttgtgaGTGTAAGCCCAGCGGTCGTGTaaacacccccccactcccactctAATCAGTCTGTCCGTGAGTCTCACTGGACTTGTAtagcgtctctctctctttctctgtatttctctttGGTTCGTTCTTCCCCTCCAGTTTattacacttgttttttttttttgttgtattttttttgtttttcgtttgttAAACAGAATAAGTCCTTGTGGTCGTCGAGAAgctattatattttgtttaaaaaaaaaaacttggggaaaaaaaaaaagaggcgTGTGCCTTTGTAAAGAAAGATAATAaagtttgtactttgttttttagacattttgtgtttctggGTCTGGTTTTTCTG
>TU143296
agGTCTTGCCCCCCGTCACGCCCCCGGCCCCCACCCACCACCCCACAGTCATCGTCCCCGCCCCGgcgctgccccccccaccacatcACGTCACCGTGGTCACCATGGGCCCCGCCTCCGTCATCAACACGGTGTCAACGTCACGGCAGAACCTGGACACCATCGTGCAGGCCATCCAGCACATTGAGGGCACGCAGGAGAAGGCCGGCACGGACGAGGAGCAGCGGCGCGCGGTGATCGTGACGCCAAGCCGCGGCCTCCCCGACGCCCCGGACTCGGACACTGCCTCCGACAGCGAGGGGCCCGGCGAGGCAGAGCTGCCCTGATCAggagtgggagggggagggaagcaaagaaagacagcccccctgacacacacacacacaatccctccACGCCCCACCGTATctcctcccacacacacacacacacacacacacacacacacacgcatgcactcGCACACAGAGGCTGTGCCACTCTGCTGGGGACGGGGTGCGCAGCGCTCAGCCTGGGCTGCGATTCGAACACGgccacctgtctgtctgtctatctgtccaTCAGGCCACCATCTCCAATACTGTACAACTTACAAAACCGTAAGAGCCCTACAAAGATGCCCTaccccccccaccgccccctGCCTCCTTTTACaactgttgtttgtttgttttttgtatttgaaaacgTCCCGGGGAGGCTTTGTACAGCTTGACACTGTGAGAATCtcaatgttttggttttgttaagtttttatttcttcagctCTTCCCACCTCAGGCTTTGGGTTGAGGAAACGATCCTCCCTACAGTAGCCCTGCCCGCCTCCCCCCGCTGGCCCGTGTCTTTCACAGAGTGCTTCGAACCCCCCCTTATTGGAAAAATAGCATCGAAAGTCTCGTATACTTTCTCATTCGAGATGTAAAGACTGCCAAAGACTGTGCCTTCCATAGGTGTAGATGTTAAAATGTCCACCAAATATCTATGGTTTCTGCCGTGTGGCCGGGACCTGACCGTCACCGGGGATAAAACGCCACTTATCATAAACCTAAGGCCGGCTTTTAATTTGTCTCTGTTGTACAGCCAGCAGCTGGAGACAATTCCCAAGAGGACAGGTTCGCACGTTCGTCTTCAAAGTCCCACTTTTGGGGAAACGTgcaaaaaacaggaaacaatcTCCcgtttttttgttctctttacCAAATATCATGGTGTGTGGCCGCCGTAACCGGACTGCACCGTTTGGCGCTGTGTAGCAGCGGACTCCGTGTCCCGAATCGCACTCTGCCGGCTGCAGCGGCAGTGAGACGGGCTCGGGGGGGGGGACGCCTACGCTGCCCTCGCTCGTGGCCGAAGTCCCTCCCCCACACAGCGTGTCCCGCGGCGGGTTTCCACTGGGCGCTCGATGTATCGTTTACATTTCCGAAGCTGCCAGCCTTTTCCGTTCAGCGTGGTCGAACTCCGTGATGCTGCTTTCTGACGCCGCAGTGGAATCCACCACGATCCCCGGTGCCGCCGGCGCTGGTTATTGTTCTGATCTGTCGCAGTGAATAAGCTATCCTACCGTTGTGCGGCTTTGAGGAACGACGTGATACTAAgtaggtgtttttgttttgtttttaagggttAACCTGGGCCTTTACAGAGAgtcgtatgtgtgtgtgtgtgtgtgtctcctgctTGTCCCGTGTGCGTGTCGTGTGTGTACACAGCTGCTGTGTTTACAGGGCCCCCGGGGGCCACTCCGTCTCTCGCAAGGAGAGTTCGCGGCGGGGGGGGAGGCCTGTGCCGCGGCCGACGCCTGTCTGTGTCGGCGGACATATCTATGCATGCTCACACGCACAATCATTTCTCGACGGCCTGCAGCTCCCGCGCCGCTGCCCTCTAGCTGCCGCCAGTCTCACACCGATGGGCGCGTCTCTCAGAGCTCGCCCGGATGAACCCTAGTGACGGCGGCTCCCTGCGAGTGGCGGAGCCGGTCTGAATGACCCCTGACCCCCATCCTCATCTCCCGAGTGGCTGCTGTATATTGGAAAAAGGCATTGGTTTTTGTGACATGAATTCAATCATCTGTAagtctgttgttgttgattaaGTTTGTCTCGGCTACGAGTGTGTATGACAATAACAGGAGCCCTGGTGCGTGAGCCTGGCGTTACTCTAGAGTGCGAGtgaagtcattttaaaaccttttgaaTAATTTGTGGAAAGGCAGTGCCCTGTGGCCGGATGGGACATTTTGTGATTGTAAATATTCTGGCATGTGGAACGCAATTAATTCCACTTGTCAgttgtggccctccaggacttTTAGGCACTAGGTtaagaggtgtgtgtgtgtgtgtgtgtgtgggtatatGTGCGAGACTTACACACAGATGGTGTGTAGAAATACTCCCTGCTTCCTGGTTTGGTGTGTTTTATGGCAATATGCCCAATATAACCCTAAACATGGAAACCTTTAGGtaacacataaaaataatactaaaccCAAAACAATAGTGGCAAACGAGAAACAAATAgatttaataaactaataaacgcATCTCTATATAAGAGTTAGCGTTGCGCCAGCAGTTCTGTTGAAAGAAAGACCGAATCAATGGTGTCCCTCGGTGAACAGCCTTGTGGGTTCAGTAACGCATCACTTCCTGCTGTGAGGAGCTGGCTTCCTGTCCAGCAGGGCGGGGCATCGTGTCATTCCTTACTGTGCTGTCCCACGGCCCGACACCACCACGACGCCATGTTTTTAGGCACAGTTGGTGTTATGTGACCAGAGTCACACAGCAGTCAACAACTAAGACTTTTATATCCATTTAGAATcggtttattttatgtgtttttggtGCTGGACGTTCTCTGGCCCAGAGGAGAACCGTCCCGAGCATCGGCCGCTCTTCCTGTCCTGATCCAGATCTCTCTCTGTTGGGGGGGCTTTTCTATCACCGCTAGAGCAACTACAGAGCGGTTTTAATTAtggctctcctcctctctcttcacCAAGCGCTTATCATGATGCGGCTCAGGTGTAGTTTGTCTGTTtccgcccccgccccccccccacccccttgttTGCCACCACTACCGTTAGGAGGGTCTCCCCTGGTCTTCTGAGGTTGAGGGGCCGCAGCAGGGTGGGCCGGGGGTCCGGGCTGGACAGAGGGCATGTTGAGATTTAAGCGGAGAGTGGGGGGAATATACGTGACTTTAGGCCACTTCCTCAAATCAGTCTTCGTCCTTCGGTGTGTGAACTGTACTGGGGCTCCCGgcgtgtttttatttcatgtttttatgtcttTGGATCGATTCCCGCTTAACAAAACCCAGAAACCGCACGCAATATACTTTCAGCCAAGAACTGGATCAGGATATTAGTTTCTACAGCGAACACTCGCTACATTTCCTCTACTGAAGCTgcaaggtttgttttttttatgttgtttttttgtgttttttcctgtaAAATCTTTATTGTGTTCAAGACATCAGATACATATCAAAGGCTGGTGAACGAGATGCTGAAATGGGATAATGAATTGATAATGAAGCACTTACGTCGgaggattatttttttttaaaggaatactAGTTGATTTAAAgctcttgttgttgttgttgatgttgtgaGTGTAAGCCCAGCGGTCGTGTaaacacccccccactcccactctAATCAGTCTGTCCGTGAGTCTCACTGGACTTGTAtagcgtctctctctctttctctgtatttctctttGGTTCGTTCTTCCCCTCCAGTTTattacacttgttttttttttttgttgtattttttttgtttttcgtttgttAAACAGAATAAGTCCTTGTGGTCGTCGAGAAgctattatattttgtttaaaaaaaaaaacttggggaaaaaaaaaaagaggcgTGTGCCTTTGTAAAGAAAGATAATAaagtttgtactttgttttttagacatttt

Function

symbol description
tfap4 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Orthologous to human TFAP4 (transcription factor AP-4).

NR:

description
PREDICTED: transcription factor AP-4 isoform X2

GO:

id name namespace
GO:0046983 protein dimerization activity molecular_function

KEGG:

id description
K09108 TFAP4; transcription factor AP-4

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018119 True 4894 mRNA 0.53 7 2247853 2266775
TU143296 False 3949 lncRNA 0.51 2 2262676 2266751

Neighbor

gene id symbol gene type direction distance location
AMCG00018120 LOC106601835,LOC107695711 coding upstream 34929 2211509 ~ 2212924 (+)
AMCG00018121 NA coding upstream 44523 2200435 ~ 2203330 (+)
AMCG00018116 NA coding upstream 129063 2116615 ~ 2118790 (+)
AMCG00018114 NA coding upstream 143071 2095555 ~ 2104782 (+)
AMCG00018115 NA coding upstream 152727 2080184 ~ 2095126 (+)
AMCG00018124 srl,LOC107661647,LOC107718567,LOC107553668,LOC107695714 coding downstream 14922 2281697 ~ 2291760 (+)
AMCG00018125 NA coding downstream 36189 2302964 ~ 2305444 (+)
AMCG00018127 NA coding downstream 61929 2328704 ~ 2334031 (+)
AMCG00018126 crebbpb,LOC108440697,LOC102779454 coding downstream 89502 2356277 ~ 2382087 (+)
AMCG00018129 trap1 coding downstream 118525 2385300 ~ 2391998 (+)
G114359 NA non-coding upstream 197676 2048571 ~ 2050177 (+)
G114346 NA non-coding upstream 226223 2006906 ~ 2021630 (+)
G114332 NA non-coding upstream 263703 1983651 ~ 1984150 (+)
G114326 NA non-coding upstream 277444 1969780 ~ 1970409 (+)
G114323 NA non-coding upstream 294589 1952874 ~ 1953264 (+)
G114484 NA non-coding downstream 143702 2410477 ~ 2412789 (+)
G114485 NA non-coding downstream 150032 2416807 ~ 2417796 (+)
G114531 NA non-coding downstream 306862 2573637 ~ 2573867 (+)
G114548 LOC104962440 non-coding downstream 342368 2609143 ~ 2609412 (+)
G114553 NA non-coding downstream 401685 2668460 ~ 2668661 (+)
AMCG00018106 NA other upstream 265287 1979046 ~ 1982566 (+)
G114330 NA other upstream 269126 1977004 ~ 1978727 (+)
AMCG00018105 NA other upstream 273929 1972838 ~ 1973924 (+)
G114320 adap1,LOC108228240,LOC107388258,LOC102218716 other upstream 298260 1947841 ~ 1949593 (+)
G114219 NA other upstream 1027637 1219779 ~ 1220216 (+)
G114518 NA other downstream 224538 2491313 ~ 2568938 (+)
G114551 NA other downstream 374071 2640846 ~ 2647774 (+)
AMCG00018196 NA other downstream 1919635 4186410 ~ 4193330 (+)
AMCG00018216 telo2 other downstream 2328158 4594933 ~ 4604105 (+)
G115049 NA other downstream 2494743 4761518 ~ 4763905 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000208_00166197_00172408 TFAP4 coding CI01000208 null 165992 ~ 172408 (-)