AMCG00018196


Basic Information

Item Value
gene id AMCG00018196
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 4186410 ~ 4193330 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018196
CGGGAATCCTGCAGGCTGGGAGAAGGCGACAGACTACACATCCCATGTTTTAAAAGAGCGATTTCCTGGAGCGAAGGTGCAAATACAAGCAACTCGTagcttggttttatttattgaggtAGCGAAACTTTAAACGTCTTTgcccacaaacacaaaaaaggacTCCAACAGGAGGAGCAGCATGTCGGAGCTGAGCGATGAGGCCAGCGAGTCGGAGCAGCTGGGGGCCAGCCTGTCGGTGTGGCTGGGAGCCGGACAGCTGGTTCGGCCCGAGGAACTGAACGTGCCCCTGGACCTGCACACCGCCTGCTCCATCGGGCAGTACGACGTGGTGGCCGAGTGCATCCGCAGGAAGGAGGTGGACGTGAATGGGAAGAACGTGGGCGGATGGACTCCCCTGATGTACGCGGCCTACATCGGGCACGACAACATCGCCAACCTGCTGCTGGAGGCCGGGGTCAGCGTCAACGCCCTCACCCCCGCGGGACAGACGCCGCTGATGCTGGCCGCCAGCTGCGGGAACGAGAGCATCGCCTACTTCCTCCTGCAGCAAGGTGCTGAGCTGGAGCAGAAGGACAAGAGAGGATGGACGGCCCTGTTCCACTGCACCAGCACTGGACATCAGCAGGTGGTCAAATTCCTCCTGGACAATAATGCGGATGCCAATGTCAAGGAACCCAAATCCGGCTTCACTCCCCTCATGGAAGCTGCTGCGTCGGGCCACGAGATCATCGTACAGTATCTCCTGCAGCACggggTGAAGATGGACGAGAGGAACAGCAAGGGAGAAACGGCTCGGGCCCTGGCCATGCTGTATGGACACACTAAGGTCGCCGGCCTCATCGACGTGCACACGGTGGCCACTCTCCCCAAACCAGGTCACTATGAAGACCTCAGCTCGTCTGAAGACTCGGACAGCGCCCCCCGGAGGCCACGCCCCACCCGCAGCAAGGTCAAAGGGCCCAGCATCCACGACGGCCCCCAGGCCATCGCCAAGTTCAGGGTCGGGGGAGCCAGCCGGCACTGCGAGCCCACCGTGGCACCGCCGGGGTACGTGACATTTCGGAACGAGGGGGAGCAGAGCGAGGGGATCTGTAACCGGGACGTCACCTCGCCCATCAATGAGCTGGATGTGCAGAGCACCAGCAGCAGAGACGAGAGCCCCTTCTTCGACAACGACACGCTCACCATccggagcagcagcagcagcagcgaggGGCTCCCGCGCATGCTCGGGATCAGCCGCGACGGCTCCCTGGAAAGCAACGAGGACTCAGACCAGGCCAAGAGGAGCTCAGCTCGGCGGCTGAACAAAGGCCACCACCACAAAAGCAAGAGTCGCCACGGCAGCAGTGAGAGTCCGCAGCCCAGCAGCACCGGGAATTGTGGGATGCGCAGACCGGCCAGCCCACCCCCAGCATACGCCGGTCCCAAGGCACGTGTCACCgacctGGCCGAGTTCCTGGAGCAGATTGGCTTCTCCAAATACCTCCCCCTGCTGGAGGAGCAGGACATCGACCTGCGCATCTTCCTCACCCTCACAGAGAACGACCTGAAGGAAGTGGGCGTCACGCTTTTTGGGCCCAAGCGGAAGATGACGTCGGCGATCGCACGGTGGCACAGCAGCACCCGGCCGCCCAGCGACGCCCTGGAGCAGGCCTACGCAGACCAGCTGGAGGCGGAGATGCAGGAGATGGCCATCCAGCTGCACAAGAAGTGCGAGGAGGCGGAGGCGCTGCGGGGCCAGGTGTCCCAGGAGAGGGAGCTGCGCACCGTGATGGAGAGCTGCCTGATGGAGGACAAGATGGCCTGGAAGAGGGTGCACCAGGAGCTCGTGGAGGCGCACAGGCTGGCGCAGGAGACGGGGAGGGCGCTGGAGAGAGTGCGGGCCTGCCAGGCGGAGATGTGTGCCAGGATGCGGAGTGATAGTGTCATTGCGCGCCGCCCCGAGGCCAGAGCCAGGCTGAAGGGGGAGGCTGGAGGCAAAGGTGCTGACACGTGGAAAGAGGGCCTGACGTCCCTCAGCCTGTCAGAGCTGACCTCGAAGCTGGAAGCGTACCAGGAGGAAATGGGGAAGGCATTGCTTTTGGTCACCAAGAGTCTGGAGGGGCTGAGTGACCCAGAGAAAGGGGCTGGGGTCGGGGCCGAGTCCTAGGCCACACCGGTGATAAAGTGGTCGCTGACGGAGGGTGACTGTGCCACCCTGGACAAGCTTTGCCACAAGAGGCGTGGCCTTGGCAGCGCTGGGCTCGCCAGGGATCAGACAAGCGGGCGGCAGGGCAGATGCCCCATCAGCCTGTGCTACGGACACTTGGCGACGAGAGGCCGTGATTTCTGCCCTAAGTGGCCCTCCCCACCTGGTGGAGAATGATTGACTGAGCCACAGAACTCCAGGGCCAATAGGGATGTCACTTATGAAGAATCCCCCATAATGCACCATTCTGTGGTGACTCCTTTTCCAGTGAACACAGAATGTATGAAGACCTTcatttgactttaaaaaagGGCCAACATAATTCAGTATAGTTTACTACTGAGGTAGAAACAGACAATGGAGATGTCATCAATGTATTGTTCTTTAAAACAATGGCCTATTATACTGGTTGCCTTTTATCTGAGGATATCAAGGATATTTTAACTCaggtttgattaaaaatgtatacagtattgtGCGAATATTTTAGGCAGGTCTGtcaatgctgtgaagtaagaatgctttcagaaatagacatgttaatagattatatttatcacttaacaaaatgcaaaatgctgttttgaaggcaaagggtggtcacaccaaatattgattttatgtagatttttcttctgttcagtcactttgcatttagttaattgataaatataatctactaacatgtctatttttgaaagcattcttacttcacagcattgac
>TU143856
CTCAAAGACGCCTCCCAACACTGTAACAGCATCCCTGTACCGTGGCTGTCCACAGGGCCTGCCAGGCGGAGATGTGTGCCAGGATGCGGAGTGATAGTGTCATTGCGCGCCGCCCCGAGGCCAGAGCCAGGCTGAAGGGGGAGGCTGGAGGCAAAGGTGCTGACACGTGGAAAGAGGGCCTGACGTCCCTCAGCCTGTCAGAGCTGACCTCGAAGCTGGAAGCGTACCAGGAGGAAATGGGGAAGGCATTGCTTTTGGTCACCAAGAGTCTGGAGGGGCTGAGTGACCCAGAGAAAGGGGCTGGGGTCGGGGCCGAGTCCTAGGCCACACCGGTGATAAAGTGGTCGCTGACGGAGGGTGACTGTGCCACCCTGGACAAGCTTTGCCACAAGAGGCGTGGCCTTGGCAGCGCTGGGCTCGCCAGGGATCAGACAAGCGGGCGGCAGGGCAGATGCCCCATCAGCCTGTGCTACGGACACTTGGCGACGAGAGGCCGTGATTTCTGCCCTAAGTGGCCCTCCCCACCTGGTGGAGAATGATTGACTGAGCCACAGAACTCCAGGGCCAATAGGGATGTCACTTATGAAGAATCCCCCATAATGCACCATTCTGTGGTGACTCCTTTTCCAGTGAACACAGAATGTATGAAGACCTTcatttgactttaaaaaagGGCCAACATAATTCAGTATAGTTTACTACTGAGGTAGAAACAGACAATGGAGATGTCATCAATGTATTGTTCTTTAAAACAATGGCCTATTATACTGGTTGCCTTTTATCTGAGGATATCAAGGATATTTTAACTCaggtttgattaaaaatgtatacagtattgtGCGAATATTTTAGGCAGGTCTGtcaatgctg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018196 True 2918 mRNA 0.57 17 4186410 4193330
TU143856 False 870 TUCP 0.53 4 4191717 4193114

Neighbor

gene id symbol gene type direction distance location
AMCG00018189 NA coding upstream 14485 4169235 ~ 4171925 (+)
AMCG00018190 NA coding upstream 23810 4160391 ~ 4162600 (+)
AMCG00018191 NA coding upstream 31975 4139448 ~ 4154435 (+)
AMCG00018182 NA coding upstream 109614 4069108 ~ 4076796 (+)
AMCG00018183 LOC107377396,LOC105355442,LOC107556640,LOC106912265,LOC107572204,LOC101073377,LOC107681642 coding upstream 122455 4060811 ~ 4063955 (+)
AMCG00018197 NA coding downstream 15803 4209133 ~ 4211747 (+)
AMCG00018203 LOC106579217,LOC108264572,LOC106578255 coding downstream 102278 4295608 ~ 4296231 (+)
AMCG00018204 LOC104948217 coding downstream 149604 4342934 ~ 4347960 (+)
AMCG00018211 xpo6,LOC106600647 coding downstream 301113 4494443 ~ 4515088 (+)
AMCG00018214 NA coding downstream 325133 4518463 ~ 4524338 (+)
G114806 NA non-coding upstream 167428 4016078 ~ 4018982 (+)
G114731 NA non-coding upstream 949166 3237043 ~ 3237244 (+)
G114699 NA non-coding upstream 1017428 3168163 ~ 3168982 (+)
G114674 ubfd1 non-coding upstream 1083240 3102166 ~ 3103170 (+)
G114629 NA non-coding upstream 1303442 2882432 ~ 2882968 (+)
G114867 NA non-coding downstream 12 4193342 ~ 4193996 (+)
G114868 NA non-coding downstream 947 4194277 ~ 4198050 (+)
G114888 NA non-coding downstream 105308 4298638 ~ 4301678 (+)
G114940 NA non-coding downstream 192850 4386180 ~ 4386889 (+)
G114984 NA non-coding downstream 395965 4589295 ~ 4590074 (+)
G114551 NA other upstream 1538636 2640846 ~ 2647774 (+)
G114518 NA other upstream 1617472 2491313 ~ 2568938 (+)
AMCG00018119 tfap4,LOC107661646,LOC107718566,LOC107553667 other upstream 1919635 2247853 ~ 2266775 (+)
AMCG00018106 NA other upstream 2203844 1979046 ~ 1982566 (+)
G114330 NA other upstream 2207683 1977004 ~ 1978727 (+)
AMCG00018216 telo2 other downstream 401603 4594933 ~ 4604105 (+)
G115049 NA other downstream 568188 4761518 ~ 4763905 (+)
G115299 NA other downstream 1756133 5949463 ~ 5951017 (+)
AMCG00018272 NA other downstream 1962158 6155488 ~ 6160616 (+)
AMCG00018280 NA other downstream 2517152 6710482 ~ 6747438 (+)

Expression


Co-expression Network