AMCG00018189


Basic Information

Item Value
gene id AMCG00018189
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 4169235 ~ 4171925 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018189
ATGAGGCTCAAAGAACCCGGGAATGCGCGTCTGGCCCGCGGACTCCAATCTGTGATGGAAGAGGCTCCTTGGGGGACCTTCCAGGATGAGCTTGACTGGTGTATCCGGCAGCTGGAGACCGACTTACTGAGGGGCGACCCCAGCCCAGTGCAAGtggAGGACGCGAGGCACGTGCTCAGTGTGCTGCAGTCTCAGAACGCCCCTGTCACAAGGAAACGCAAGGTGATGCACCGGGCATTTGGGGACTACAGGCACAGGATGACCGCGGAGCACAGGGAACAGGAGGCCGCAGgggCTGCGCAGCAGGGGGCCGGTGCGGCGCTCAGGAGGCAGGCGGGCGATGGGGGCAGCTTCACCCGCACCGACAACTCCTTCACATTCAACTTCTTCCCAGACGGCTCGGCGGCAGGAGCCCGGGAAGAGGCAGAGACCCCCGCCGCCCCCATGCTGACGGACACCGCAGCGCCCGGCCCCAGCCTCCTGCCGGGAACGGGTCCCGGCTTCGCCTTCGACTTCCGGATCCCTGCCGAGGAGCAGGACGCCCCCAGGACTCTGGGGGACGTTCAGGAGGGAGAAGACCCCAAAGAGGGCAACTCGGCGGCCGCACAGGACACCAACCCCGCCTCTGAACCGCCGCCCTCCAAATcgcagaaaaagaagaagaagaagaagaaagctgGCGACAAGATCCCGGCGGAGGGCAGCGAGAGCCAGGCGAAGCAGCCGGCCGCCTTGCAGGGGCCCCGGCCCACCCCCTCGGGGGAACCCGCGGCGCCGTCCTCCGATCAGCAGCTGGCGCGAGAGCTGGACTGGTGCATCGAGCAGCTGGAGCTGGGCCTTCACACACAGAAGTCCAATCCGAAACAGGTGGAGGAGGCCACTCGGGCCCTGAGGACCCTGCGCAGCAGCAAAGCCCCGCTGGTGAAGAAGAGGCAGGTGATGAGGGCCACGCTGGGCGACTACAGGAAGAagatggaggaggagaaagCCAAGCAAGCTAAACTCCTACAGGCGGCTGTGAAGTCGGCCCGTGTCACCGCCGTGTCCGAGCCCCTCAAGAAGCCCGTGTTCCACAGGAGGGCGGAGCGCCGGCCGCAGTCTGGACCCCTCGACCGCCCGGACGCCCCGGACCCCGGCGTGGGCGGGTTCGTCTACACCCCGGCGCAGGACGAGTTCAGGTTCAACTTCTTCTGAGCGCGGCGCGGCTCCGGGACGCTGTGTGGAGAGgggtctgtgtgttttgtgtgtgtgtgtaacatctGTAGTCTGAGAGAAGACCCGTTATGTATTCACCAGCTGATTCTCTAGGACCTTTAGCTGGCTGACACATTTCTTACCTCATTCCAGATTCATGAATTGTCTGATTTGGTgccaatatttaaataaatgagtgggTAAGAATAAA

Function

GO:

id name namespace
GO:0043226 organelle cellular_component
GO:0043229 intracellular organelle cellular_component

KEGG:

id description
ko03008 Ribosome biogenesis in eukaryotes
ko03460 Fanconi anemia pathway
ko04110 Cell cycle

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018189 True 1405 mRNA 0.63 8 4169235 4171925

Neighbor

gene id symbol gene type direction distance location
AMCG00018190 NA coding upstream 6635 4160391 ~ 4162600 (+)
AMCG00018191 NA coding upstream 14800 4139448 ~ 4154435 (+)
AMCG00018182 NA coding upstream 92439 4069108 ~ 4076796 (+)
AMCG00018183 LOC107377396,LOC105355442,LOC107556640,LOC106912265,LOC107572204,LOC101073377,LOC107681642 coding upstream 105280 4060811 ~ 4063955 (+)
AMCG00018181 LOC106940169,LOC103155118,LOC106907654,LOC103462289 coding upstream 141441 4020716 ~ 4027794 (+)
AMCG00018197 NA coding downstream 37208 4209133 ~ 4211747 (+)
AMCG00018203 LOC106579217,LOC108264572,LOC106578255 coding downstream 123683 4295608 ~ 4296231 (+)
AMCG00018204 LOC104948217 coding downstream 171009 4342934 ~ 4347960 (+)
AMCG00018211 xpo6,LOC106600647 coding downstream 322518 4494443 ~ 4515088 (+)
AMCG00018214 NA coding downstream 346538 4518463 ~ 4524338 (+)
G114806 NA non-coding upstream 150253 4016078 ~ 4018982 (+)
G114731 NA non-coding upstream 931991 3237043 ~ 3237244 (+)
G114699 NA non-coding upstream 1000253 3168163 ~ 3168982 (+)
G114674 ubfd1 non-coding upstream 1066065 3102166 ~ 3103170 (+)
G114629 NA non-coding upstream 1286267 2882432 ~ 2882968 (+)
G114867 NA non-coding downstream 21417 4193342 ~ 4193996 (+)
G114868 NA non-coding downstream 22352 4194277 ~ 4198050 (+)
G114888 NA non-coding downstream 126713 4298638 ~ 4301678 (+)
G114940 NA non-coding downstream 214255 4386180 ~ 4386889 (+)
G114984 NA non-coding downstream 417370 4589295 ~ 4590074 (+)
G114551 NA other upstream 1521461 2640846 ~ 2647774 (+)
G114518 NA other upstream 1600297 2491313 ~ 2568938 (+)
AMCG00018119 tfap4,LOC107661646,LOC107718566,LOC107553667 other upstream 1902460 2247853 ~ 2266775 (+)
AMCG00018106 NA other upstream 2186669 1979046 ~ 1982566 (+)
G114330 NA other upstream 2190508 1977004 ~ 1978727 (+)
AMCG00018196 NA other downstream 14485 4186410 ~ 4193330 (+)
AMCG00018216 telo2 other downstream 423008 4594933 ~ 4604105 (+)
G115049 NA other downstream 589593 4761518 ~ 4763905 (+)
G115299 NA other downstream 1777538 5949463 ~ 5951017 (+)
AMCG00018272 NA other downstream 1983563 6155488 ~ 6160616 (+)

Expression


Co-expression Network