G114940


Basic Information

Item Value
gene id G114940
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 4386180 ~ 4386889 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU143949
TTTATTGTATGAATACAGGAAGTAACAATAGTTAGCATTCGAAGGAAACTAGGCAAATACACAGAAACAGTTTTTCAAGGCTAAGTTCCCATGGTGCACCCTGATGAGAGCATGTGACGACACACTGGAATGATCCTCTCCTGACATTGCGATGGGTCCCAGGGGTCTCTCCAGGCCAgctgtacattttcataaagattTCGATTAAGCCACAGTAATGTTGTTGTTGGAGCAGAGACCTAAATTAGACACTGAAACATTAGCTCTGTGAGATGGCTGTCTAGCATTCTAGTATATACTTTGTTCATTAGGAGCAGTTAGCATTGATTgagttgggggggggtggaggaggcATTGATTTTTCCTTTGTATTGGTTGTCTTTTAATTTCCAATTCACAGCTCTAATTTGTACTTTACCTTTCCTTTCCTCTACAATGTTCCTGTAAGTCCCTACAAATTCCTGCAGCCATCCTTTTGTTCAGTGTACATCACAGTCGGGGTTACACTTCTCTGCCCTCCTGGAAAACAGTTAACATACTCTCTCAGCTGTGGATTCGTCCACGGCTCCCAACTCACCTGTGGCCCTCAGACAGGGAACCACAAGGTCCGGATGGCCGTGACACTGGGTTTGGTCACAGTACAAATGGAAAGACAAGCCACAGTACACTTTATGTAATTCATGAAACAATACTGATAATAAGAATTCATT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU143949 True 710 lncRNA 0.43 1 4386180 4386889

Neighbor

gene id symbol gene type direction distance location
AMCG00018204 LOC104948217 coding upstream 38220 4342934 ~ 4347960 (+)
AMCG00018203 LOC106579217,LOC108264572,LOC106578255 coding upstream 89949 4295608 ~ 4296231 (+)
AMCG00018197 NA coding upstream 174433 4209133 ~ 4211747 (+)
AMCG00018189 NA coding upstream 214255 4169235 ~ 4171925 (+)
AMCG00018190 NA coding upstream 223580 4160391 ~ 4162600 (+)
AMCG00018211 xpo6,LOC106600647 coding downstream 107554 4494443 ~ 4515088 (+)
AMCG00018214 NA coding downstream 131574 4518463 ~ 4524338 (+)
AMCG00018213 decr2,LOC107677236,LOC107667207 coding downstream 139111 4526000 ~ 4529339 (+)
AMCG00018212 NA coding downstream 182944 4569833 ~ 4584912 (+)
AMCG00018215 tmem204 coding downstream 223953 4610842 ~ 4620287 (+)
G114888 NA non-coding upstream 84502 4298638 ~ 4301678 (+)
G114868 NA non-coding upstream 188130 4194277 ~ 4198050 (+)
G114867 NA non-coding upstream 192184 4193342 ~ 4193996 (+)
G114806 NA non-coding upstream 367198 4016078 ~ 4018982 (+)
G114731 NA non-coding upstream 1148936 3237043 ~ 3237244 (+)
G114984 NA non-coding downstream 202406 4589295 ~ 4590074 (+)
G114985 NA non-coding downstream 206571 4593460 ~ 4593845 (+)
G115061 NA non-coding downstream 427129 4814018 ~ 4814419 (+)
G115099 NA non-coding downstream 708259 5095148 ~ 5100938 (+)
G115188 NA non-coding downstream 929564 5316453 ~ 5317925 (+)
AMCG00018196 NA other upstream 192850 4186410 ~ 4193330 (+)
G114551 NA other upstream 1738406 2640846 ~ 2647774 (+)
G114518 NA other upstream 1817242 2491313 ~ 2568938 (+)
AMCG00018119 tfap4,LOC107661646,LOC107718566,LOC107553667 other upstream 2119405 2247853 ~ 2266775 (+)
AMCG00018106 NA other upstream 2403614 1979046 ~ 1982566 (+)
AMCG00018216 telo2 other downstream 208044 4594933 ~ 4604105 (+)
G115049 NA other downstream 374629 4761518 ~ 4763905 (+)
G115299 NA other downstream 1562574 5949463 ~ 5951017 (+)
AMCG00018272 NA other downstream 1768599 6155488 ~ 6160616 (+)
AMCG00018280 NA other downstream 2323593 6710482 ~ 6747438 (+)

Expression


Co-expression Network