AMCG00018203 (LOC106579217,LOC108264572,LOC106578255)


Basic Information

Item Value
gene id AMCG00018203
gene name LOC106579217,LOC108264572,LOC106578255
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 4295608 ~ 4296231 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018203
ATGGCAGAGACGGCGGCAGCAGCTCCAGCCCAGAAGGCGAAGAGGGCCAAAGCCCCCAAAAAGGCCTCCACGCACCCCAAGTACTCGGACATGATCGAGGCGGCCGTGCACGCCGAGAAGAGCCGCGGGGGGGCGTCCCGGCAGTCCATCCAGAAGTACATCAAGAGCCACTACAAGGTAGGGGACAACGCGGACTCCCAGATCAAGCAGTCCCTCAAGCGGCTGGTGCTCACCGGGGTGCTGTGCCACACCAAGGGCATCGGGGCGTCGGGCTCCTTCAAGCTCGCCAAGGCCGGCGACTCCAAGAAGGCGGTCAAAGCCAAGGTCCCCGAGAGGAAGGTGGTCAAGAAGAAGACCCCGGCCAGCAAGGCGGCCAAGCCCAAGAAGGTGGCCAAGCCCAAGAAGGTGACCAAGACCCCGGCCAAAGCCAAGAAGCCCAAGACGGCGGAGAAGAAGGTGAAGAAGACGCCGGAGAAGAAGAAGCCGGCGCCCAAGCCCAAGAAGCAGGAGAAGCCGAAAAAGGCCAAAGTGTCCAAAGCGGCCAAGACGAGCAAAGCCAAGAAAGCCAAGCCGACCAAGTCCAAAGCCAAGGCGAGCCCCAAGAAAGCGGCCAAGAAGAAGTAA

Function

NR:

description
PREDICTED: histone H1.0-B-like

GO: NA

KEGG:

id description
K11275 H1_5; histone H1/5

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018203 True 624 mRNA 0.62 1 4295608 4296231

Neighbor

gene id symbol gene type direction distance location
AMCG00018197 NA coding upstream 83861 4209133 ~ 4211747 (+)
AMCG00018189 NA coding upstream 123683 4169235 ~ 4171925 (+)
AMCG00018190 NA coding upstream 133008 4160391 ~ 4162600 (+)
AMCG00018191 NA coding upstream 141173 4139448 ~ 4154435 (+)
AMCG00018182 NA coding upstream 218812 4069108 ~ 4076796 (+)
AMCG00018204 LOC104948217 coding downstream 46703 4342934 ~ 4347960 (+)
AMCG00018211 xpo6,LOC106600647 coding downstream 198212 4494443 ~ 4515088 (+)
AMCG00018214 NA coding downstream 222232 4518463 ~ 4524338 (+)
AMCG00018213 decr2,LOC107677236,LOC107667207 coding downstream 229769 4526000 ~ 4529339 (+)
AMCG00018212 NA coding downstream 273602 4569833 ~ 4584912 (+)
G114868 NA non-coding upstream 97558 4194277 ~ 4198050 (+)
G114867 NA non-coding upstream 101612 4193342 ~ 4193996 (+)
G114806 NA non-coding upstream 276626 4016078 ~ 4018982 (+)
G114731 NA non-coding upstream 1058364 3237043 ~ 3237244 (+)
G114699 NA non-coding upstream 1126626 3168163 ~ 3168982 (+)
G114888 NA non-coding downstream 2407 4298638 ~ 4301678 (+)
G114940 NA non-coding downstream 89949 4386180 ~ 4386889 (+)
G114984 NA non-coding downstream 293064 4589295 ~ 4590074 (+)
G114985 NA non-coding downstream 297229 4593460 ~ 4593845 (+)
G115061 NA non-coding downstream 517787 4814018 ~ 4814419 (+)
AMCG00018196 NA other upstream 102278 4186410 ~ 4193330 (+)
G114551 NA other upstream 1647834 2640846 ~ 2647774 (+)
G114518 NA other upstream 1726670 2491313 ~ 2568938 (+)
AMCG00018119 tfap4,LOC107661646,LOC107718566,LOC107553667 other upstream 2028833 2247853 ~ 2266775 (+)
AMCG00018106 NA other upstream 2313042 1979046 ~ 1982566 (+)
AMCG00018216 telo2 other downstream 298702 4594933 ~ 4604105 (+)
G115049 NA other downstream 465287 4761518 ~ 4763905 (+)
G115299 NA other downstream 1653232 5949463 ~ 5951017 (+)
AMCG00018272 NA other downstream 1859257 6155488 ~ 6160616 (+)
AMCG00018280 NA other downstream 2414251 6710482 ~ 6747438 (+)

Expression


Co-expression Network