AMCG00018183 (LOC107377396,LOC105355442,LOC107556640,LOC106912265,LOC107572204,LOC101073377,LOC107681642)


Basic Information

Item Value
gene id AMCG00018183
gene name LOC107377396,LOC105355442,LOC107556640,LOC106912265,LOC107572204,LOC101073377,LOC107681642
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 4060811 ~ 4063955 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018183
CTTTCATTCAACATTATGATATCCGTCTCTCCGCCAATGCGAAAGCAAAAGCAACGGCAGTGGGCGTCACAGGTGCAGTGACGTCACAAGCGCTATAAAGAGTAGCCCGGCCTCCTCAGCTGCTACACAGTCTAGTGTTGCAGTCGGCAGCGGAGGAGCGCGGAGTTGTTTCTTTTGCGGAACGTTCGATTTCTAGAAAGCCTTGAGTCGCAATGGCACGTACCAAGCAGACTGCCCGTAAATCCACCGGTGGAAAGGCCCCCAGGAAGCAGCTGGCCACCAAAGCTGCCCGGAAAAGCGCGCCCTCTACTGGTGGTGTGAAGAAACCTCACAGATACAGGCCCGGAACTGTCGCTCTGAGAGAGATCCGTCGGTACCAGAAGTCCACTGAGTTGCTGATCCGCAAGCTTCCCTTCCAGCGCCTGGTGAGAGAGATTGCGCAGGACTTCAAGACTGACCTCAGGTTCCAGAGTGCAGCCATTGGGGCTCTTCAGGTAAATTAGACTTTGATTGCATGTTGCCTCCTCAGTAGATGCAATAGACAATAATGCAGCATGGGGTCAGGAGGAATGATTTGACTAGTTACATTATTCTAATTCCATCTGGTCTCTTTAATTGAAGTCCCAAAGCCCCCTAATACAGAGTAGTAGTTTCACACTGATAAATGTGACAACCGGAGCATCTAAATAGTTTGGATTTCATAGTGACTTGTGGGTGCCATCTTTGCAAAGTGGGGGAATTCTTCCTATATGACATCCATTGGCAAAGGCCAGTCCAGCATGTCCTAGATTTCCATGTGAACTTGTTTTCTAGCTTTTCAATACTAGGTGTAAGCTTTTATAAAGTAATGCACTGACCGTGAGAACATGTGGACCAAGATTCACATTTGATACCCATTTACATGAGAACTTATCACCTCTTTGACATAAACTGCAGACTTGGAATGCACTGCTCACAGTATTTACAAAGGTGACCtggtgtgtgtacatgtatataacTTGCTTATTTTTAACTTACAGGAGGCCAGCGAGGCTTACTTGGTCGGTCTGTTTGAGGACACCAATCTGTGCGCCATCCATGCAAAGAGAGTCACCATCATGCCCAAGGACATCCAGCTGGCTCGGCGAATCCGGGGCGAGCGTGCTTAAGCAGCAGCTTTCGAACTTTTATCATCTTTTTGGGGAAAAATCCATTTTTGAAATCTTTTATTGAACTGCAAATGCCTTCATGTGGAGGttcaagtttattttgtatttttgttagtaTTGATAGaaaactaaaaggaaaaaaaaaaaat

Function

NR:

description
PREDICTED: histone H3.3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018183 True 1297 mRNA 0.46 3 4060811 4063955

Neighbor

gene id symbol gene type direction distance location
AMCG00018181 LOC106940169,LOC103155118,LOC106907654,LOC103462289 coding upstream 33017 4020716 ~ 4027794 (+)
AMCG00018184 baiap3,LOC107550313,LOC107719179,LOC107703313 coding upstream 47743 3980692 ~ 4013068 (+)
AMCG00018180 ube2i,LOC107677193 coding upstream 104072 3949741 ~ 3956739 (+)
AMCG00018178 NA coding upstream 117291 3930521 ~ 3943520 (+)
AMCG00018179 pdpk1,LOC100380750 coding upstream 150623 3900513 ~ 3910188 (+)
AMCG00018182 NA coding downstream 5153 4069108 ~ 4076796 (+)
AMCG00018191 NA coding downstream 75493 4139448 ~ 4154435 (+)
AMCG00018190 NA coding downstream 96436 4160391 ~ 4162600 (+)
AMCG00018189 NA coding downstream 105280 4169235 ~ 4171925 (+)
AMCG00018197 NA coding downstream 145178 4209133 ~ 4211747 (+)
G114806 NA non-coding upstream 41829 4016078 ~ 4018982 (+)
G114731 NA non-coding upstream 823567 3237043 ~ 3237244 (+)
G114699 NA non-coding upstream 891829 3168163 ~ 3168982 (+)
G114674 ubfd1 non-coding upstream 957641 3102166 ~ 3103170 (+)
G114629 NA non-coding upstream 1177843 2882432 ~ 2882968 (+)
G114867 NA non-coding downstream 129387 4193342 ~ 4193996 (+)
G114868 NA non-coding downstream 130322 4194277 ~ 4198050 (+)
G114888 NA non-coding downstream 234683 4298638 ~ 4301678 (+)
G114940 NA non-coding downstream 322225 4386180 ~ 4386889 (+)
G114984 NA non-coding downstream 525340 4589295 ~ 4590074 (+)
G114551 NA other upstream 1413037 2640846 ~ 2647774 (+)
G114518 NA other upstream 1491873 2491313 ~ 2568938 (+)
AMCG00018119 tfap4,LOC107661646,LOC107718566,LOC107553667 other upstream 1794036 2247853 ~ 2266775 (+)
AMCG00018106 NA other upstream 2078245 1979046 ~ 1982566 (+)
G114330 NA other upstream 2082084 1977004 ~ 1978727 (+)
AMCG00018196 NA other downstream 122455 4186410 ~ 4193330 (+)
AMCG00018216 telo2 other downstream 530978 4594933 ~ 4604105 (+)
G115049 NA other downstream 697563 4761518 ~ 4763905 (+)
G115299 NA other downstream 1885508 5949463 ~ 5951017 (+)
AMCG00018272 NA other downstream 2091533 6155488 ~ 6160616 (+)

Expression


Co-expression Network